RNA id: TU250011


Basic Information

Item Value
RNA id TU250011
length 1279
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G184628
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16399438 ~ 16404077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaagcagaaaaaagCCTACCTGCTGTGGATCCTGTCTGTAAGCTGTGTGTCCTGCTCTGGGACTGGAGCTGTACTCATGTTGGATGTCCAGCATGTCCAGCAGCTCAATAAGTCCTTCATCCTTCACTCTGCCACAACCTAGCAACTCCTGTCCCACTAGCCCACCCCTCTGGATCTTCTGAGCTCCAGAGGAAGCACTTGAGACCCTGTAGTCCATTTTGGGCTCCACATGTTGGGGTGCAGGCTTCCttgctccctctctgtctgcccCACTGTTAGCCCTGGGTCTAATCTTTGGGCTCCCTGCCACCTGTGATCTCCTCTGGGACTGCTGAGGACTCCGCTGGGCCCCTTTAGAACCGCTGTAGCCTCCTCTGTGATCCTTGTAGTTCTGTCTACCAGAGTCTGATACTAACCCCCATTCTTGGCCGGGCTCTATCTCTGCTGTCAGCACACCGGAATCTGATTGGCATTTCTGGGCAGGCACACGCATGGGCACCCTGCCGGAGACTACAGTGGCTCCCAGAGCTCTGCGCTGACAGCTCGGGGTGGGACACTTTGGCTCTTGTGCCAGCCCCTGATTGGTCACCACCCCTGATTCGGTGAGCATTTTGCCCTCGTTTTCCTGAAGCATGGCTCCAAACTTCCTGAGAACAGAGGGGCTGCCGCACTTCCTATCTCCCAGGACGCCAGGACCGTAGGACTTCCTGTCTGGAGCAGGAGATTCAGCTGTTGTTATGGGGAGCTGTGAGCGTGGTTGTACAGCAGGAGCATCCCTTTGTCCAAGAGGGGGCTTGGcacctgtgttttctttgttgGGGGAACTCTCTCTGCGGGGGGAGCTCTTCATGTGAGACACTTGGTTCTTCCTGTTTTCAGTGTCCTCAAAACTGCCCACAAACTGCTCTTCACCAAGCCTTTCATTTCCAGAATTTTTTCTGATCTCTGATCCCGGGCTCACCTTGATCGTGTCACTGAAGCGCACGTGGCGAGCTCCATTGTTCTTCCGGCTCATTTGCTTCCCCTGCCCCAAATAATCCTGCAACAAGTCTCCAATCTCTGAGTTGGCGTGGCAGTAACCGTAGCCATTTTGATGACTCGCAGGGTAGCTGTACCCACTGGGGCTATAGTTACAGCCGTTACTATAGTGATGTGGCACAGGTATAGCTCCAGGGTGATTCTTGCTATGATGGCTGGGCGCAAAAAGACCATTGCCATTTTTCTGGTGGTCAGTAGTGATATCGTTTGCTCCTCTGCGGGCCTGAACTTCATTGTACaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249989 lncRNA upstream 10351 16333055 ~ 16391851 (+) False nkain2
TU250006 lncRNA upstream 20421 16379507 ~ 16381781 (+) False cenpw
TU249994 lncRNA upstream 45654 16291211 ~ 16356548 (+) True G184618
TU249948 lncRNA upstream 354521 16045809 ~ 16047681 (+) True G184584
TU249901 lncRNA upstream 474540 15926071 ~ 15927662 (+) True G184540
TU250017 lncRNA downstream 7599 16411676 ~ 16413501 (+) True G184633
TU250220 lncRNA downstream 89117 16493194 ~ 16494494 (+) False LOC120546561
TU250223 lncRNA downstream 89117 16493194 ~ 16499974 (+) True LOC120546561
TU250222 lncRNA downstream 91880 16495957 ~ 16501887 (+) False LOC120546561
XR_005636882.1 lncRNA downstream 97789 16501866 ~ 16516333 (+) False LOC120546561
XM_039782795.1 mRNA upstream 11572 16387758 ~ 16390630 (+) True LOC120547268
XM_039782793.1 mRNA upstream 15424 16384271 ~ 16386778 (+) True LOC120547267
XM_039782792.1 mRNA upstream 20346 16379479 ~ 16381856 (+) True cenpw
XM_039781847.1 mRNA upstream 26988 16357572 ~ 16375214 (+) False tpd52l1
XM_039781549.1 mRNA downstream 82937 16487014 ~ 16490639 (+) True LOC120546559
XM_039782672.1 mRNA downstream 114367 16518444 ~ 16523666 (+) True pgm3
XM_039782618.1 mRNA downstream 123912 16527989 ~ 16534031 (+) True ccnc
XM_039782711.1 mRNA downstream 132234 16536311 ~ 16544495 (+) True faxca
XM_039782712.1 mRNA downstream 132738 16536815 ~ 16544495 (+) False faxca
TU250012 other upstream 99 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 434079 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 685918 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 685918 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 738628 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 361468 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 421617 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 889577 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 937760 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 937760 17341837 ~ 17365977 (+) False map7b

Expression Profile