RNA id: TU250012



Basic Information


Item Value
RNA id TU250012
length 824
RNA type TUCP
GC content 0.45
exon number 2
gene id G184628
representative False

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16399438 ~ 16404077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGTTAGCAGGGagaaaaaaaaaaaacattaaaggcATATCATAGTCATTTGTCACAACTGTTATTTGAACACCTTAAATATATCACTTTGACAATATGATACATTAAAACACACTGTTGTTGACAGTTAGCAGATTGCTGCTGGGAGCACAGCCGCGACTTAATCTATTCCTACTGGTGGCCAGGTTGAATTTGATTCAACAGGGCAACCATGAGGATTAAACACATGAGCATGCACCCTCAAACTGGGGCTGCATGCAAAATCTCATTATACAGAAAAGACCTgaaattcaatacaaaaaagaGGATAAGGGGGTAAAAGCAGCTAAGCAATATGTTGATGTGTTGGTAAAGGTTTCATCACAGAAGAAGCAAAAAGCCACAGCAACACTGGAGAATGTCGTGGATGTGTTTTATCTGGAACATGTCATCAAGATGAAATTAAGCATTTCTTTAACTCTCTTAAAGCACTTTGTTTCACAGAAAAGTCCTTACTatttacacagagagagagggtttCCCTGGAGGAAGGGATCAAGCTTTGGTGAAATGGAAAGGTATCACATAATGACTGTCTCAGTCTGAAGAGAATAGGAAACGAGAGGCCGGTGCTTCAGGACGGGACTTGGGGTTCTGGTCATGGGGCTAGGGGGGCGAGTCAGGGGACTGGGGGGCCTGTACATTGGGCCTGATGGGGTGGTGATGATGGCAGTAGGGGTGCGGCCGGCCCACCTGGAAGGAGGTCGCTGATTGGCTGGCCGCGCAGGACGAGAGAAGCTCTTTTTAGGATTGGCTGGGGACAACTTGGCTGGGTTTACCTGAGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU249989 lncRNA upstream 7587 16333055 ~ 16391851 (+) False nkain2
TU250006 lncRNA upstream 17657 16379507 ~ 16381781 (+) False cenpw
TU249994 lncRNA upstream 42890 16291211 ~ 16356548 (+) True G184618
TU249948 lncRNA upstream 351757 16045809 ~ 16047681 (+) True G184584
TU249901 lncRNA upstream 471776 15926071 ~ 15927662 (+) True G184540
TU250011 lncRNA downstream 99 16402202 ~ 16404077 (+) False G184628
TU250017 lncRNA downstream 9573 16411676 ~ 16413501 (+) True G184633
TU250220 lncRNA downstream 91091 16493194 ~ 16494494 (+) False LOC120546561
TU250223 lncRNA downstream 91091 16493194 ~ 16499974 (+) True LOC120546561
TU250222 lncRNA downstream 93854 16495957 ~ 16501887 (+) False LOC120546561
XM_039782795.1 mRNA upstream 8808 16387758 ~ 16390630 (+) True LOC120547268
XM_039782793.1 mRNA upstream 12660 16384271 ~ 16386778 (+) True LOC120547267
XM_039782792.1 mRNA upstream 17582 16379479 ~ 16381856 (+) True cenpw
XM_039781851.1 mRNA upstream 24224 16357559 ~ 16375214 (+) False tpd52l1
XM_039781853.1 mRNA upstream 24224 16357560 ~ 16375214 (+) False tpd52l1
XM_039781549.1 mRNA downstream 84911 16487014 ~ 16490639 (+) True LOC120546559
XM_039782672.1 mRNA downstream 116341 16518444 ~ 16523666 (+) True pgm3
XM_039782618.1 mRNA downstream 125886 16527989 ~ 16534031 (+) True ccnc
XM_039782711.1 mRNA downstream 134208 16536311 ~ 16544495 (+) True faxca
XM_039782712.1 mRNA downstream 134712 16536815 ~ 16544495 (+) False faxca
TU249895 other upstream 431315 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 683154 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 683154 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 735864 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 1080602 15301925 ~ 15318836 (+) True G184458
XR_005636928.1 other downstream 363442 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 423591 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 891551 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 939734 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 939734 17341837 ~ 17365977 (+) False map7b

Expression Profile