RNA id: TU250223


Basic Information

Item Value
RNA id TU250223
length 2732
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC120546561
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16493194 ~ 16516333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGTTCCGGGGGTTGTTCCAGTGGCAGGGAAGCCTGGCCTCACCATGGGCATCATGGGAGCTCCTGGTGCCCCAGGCTGAGGTGCCGCTGGGGTTCCCATTGTGagatTACTTGCCATGTTAGCCATGGAGGTGTCAACATCCCCCGCctgaggggtcaaagtgggctTCATTACATCGCcTGACATGAGCTCAGCACCGGgggcagcaggagcagcagcagctgtggcATCTCCTCCTGTGGACTCTGGCAGGTCAACCCAAAATACACCAAACCATGCCATGCCATGCCAGGTCAAAGTAGGTTGTTGAGCCATCGCAGCATAAGGGCAAAGAAGGGGTAATAGTCAGCCTTCGGCTTCACGCTGGTAATGCCAAACAAAGTGCATAGAGTTAGATAGGAAGACTGAATACACAATTATGTATATTTACATAAAACCAGGAAACATTGCTTTCATATGCACACATCCACACATCTCAGCATAATGCCATACTCATTTGACAGTCGCAGTAAAGCATCCACCTGCATTTTCAGAGGCACCAAGGCcaagaaaaaagaggaaagtaaaaaacaaaaaagaaaagtgaagtCGTAGCTTGCAGTTCAGAAATAATTTGACTATTTCAGCATGATCAAGCTTCATCAGGTATTCCCATTGTTACAAGATATCTATGAGTTTCAACACAAAAGTACAATATGCAATAACATAACTTCCCAGTATTTATAAAACCTAATATCAATTTTAGTAGTTTAATTTGATGTTTCCCAGATTttactcttcttctttagtaATGTCTTCATGAACAGGGGAGGCAGAGTGAGGGCAGCCGGACATGTGAGTTACCCACCACCAAACAGGTTCACGATGGCTCCCATGTCAATTTTGGGTGGGGGTGCGGAGGAGAGGATGGGGGCAGGGGAGCTGAACATATCTGCTGGGAAGGGCAAGGTGGAGATAGTGTTTAGAACCCAAACATACTcacgcacaaatacacacatactatTGACCCGTTATTTATTATAATGCACATTTATCAATTGCAATCGCAGTGCATGCAGTACATGCTGGAATGGGAAAGTAGGTAAGAGTGATTTAGTAAACGTTTCAGACAGCTCAATAGCTTTTAGCTGACCCATAAGAGAGCAatctcatttcctttttttccccttccctGATCAAAGCCAAGGACAAAGCTGAAAATCAAGACAGGatatgagagtagagcgcacgAGAGATTGCAGAGTAGGTGCAATCGGGTACCTGCTGTAAACAAGTCAACACTGGGAGCGGGGTCTGCTTTGGTGAAGCTTATGTCTGGCATGGAATCAAAGATATCTATGAACACATGCGCACCCAGAGACAGGAATATTAACAAACACTTTGAAATGGTCAGGttgctctcacacacagcagccaACTGAAAAAGGCCTTCAATATGTGCAGATACATCTGATACCAATGAAGaataaaagagaggagaggatgacAAGCAGCACCAGATGGGGGAAATCAGCAGGATGCTAATCAATACGACTAAGAGCACAAGACATTAAGATTAATACCGGACCACACACATCTCTAACGTTTACCGCTGAAAAGGTCAGTCGCAGGGTTGGCAGCGCTGGGAGCGCTGGGAGCTGAAATGGTTgcagtggtggtgatggtgctgGATGCAGAGGTGAAGAGCGGGGAAGGGGAGGGGGATGAGCTAAAACAGGCATCCAGCGAACTACCCAGGTTATTATTCTCCACAGTCATCATGCCGAAAAGGTCTAGACCTGAAGACGCTGCGTTGGTGCTACCATCCAAGGGAGCAAAGGGGTCTTTGGGGAAGAAGTGGGGTGGGGTGTGAGGAGGAAATGTAACACATACATAGAAGGGGAGGATGTTAAAGACTTTTACACAACATAGACACattttatgtgatgatgatgaaaatacTGCTATAAACATGAAAgctgaggagaaaaaaaatctgagagGAATGATAGGAGAGAATGTGCAGAGCTCCAACACACTCCTGCTGTCAGTCCAAACAACTAAAAATAGCATCTGACAAATGAAGCAAATATTGAGCATCTTCACAGTATATAAACCTGAGGAACAAACCACAACTAAAACCAGGGAACTGCCACAGGCAACCTTCTCCATAACAGAAAATGCACAAATCTTCTGATGCCAAAAGATAAAAGACAAGTAAGAGCATTGTTCTTGATCGCCATGGAAACAACAATAGTACTGTCCAGACACCAGCAGTAATGAATAGCAAATCTATACGCCTACTGTTCCTGCACAAATCCTTGAGATGAAGCCATGATTAAAATGTGAGACCAACcagaaatgcacacaaacacactggcaCAAACAGCTCTGTAAGTTATTGAACATCTTTACATTCACAGTCATGGCACTCAAACCAAAAAAGGGTTTATTGGATTTGTTTAGGGGGATTTATTGACAGAAATGGGATATAATATTCATAGTTATGTTTTGATTAGTGTAGTGACACTTCATATCTACATAAGGGCGAGTCTGCTTCCACAGAGTCTGCCATGTTTCTATAGTAGCCATTAAGGGACAAACCAAACACTGGCTCTAGAGAGGGTCTTTCACGTTTTTACATCACCTGAAGGCCACCGTAGGTTCTCCTACACGCTTGGAAATTGAGGGATGAGGGAAAGGGTATTCAGTTGGTTGCAATCTGCAACCTCACCACTCAGTAAATCCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250017 lncRNA upstream 79693 16411676 ~ 16413501 (+) True G184633
TU250010 lncRNA upstream 89117 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA upstream 89117 16402202 ~ 16404077 (+) False G184628
TU249989 lncRNA upstream 101343 16333055 ~ 16391851 (+) False nkain2
XR_005636882.1 lncRNA downstream 1892 16501866 ~ 16516333 (+) False LOC120546561
TU250247 lncRNA downstream 95966 16595940 ~ 16610380 (+) True G184796
TU250330 lncRNA downstream 181921 16681895 ~ 16686079 (+) True vegfab
TU250341 lncRNA downstream 224903 16724877 ~ 16726392 (+) True G184851
TU250480 lncRNA downstream 433722 16933696 ~ 16956864 (+) True G184948
XM_039781549.1 mRNA upstream 2555 16487014 ~ 16490639 (+) True LOC120546559
XM_039782795.1 mRNA upstream 102564 16387758 ~ 16390630 (+) True LOC120547268
XM_039782793.1 mRNA upstream 106416 16384271 ~ 16386778 (+) True LOC120547267
XM_039782792.1 mRNA upstream 111338 16379479 ~ 16381856 (+) True cenpw
XM_039781850.1 mRNA upstream 117980 16357573 ~ 16375214 (+) False tpd52l1
XM_039782672.1 mRNA downstream 18470 16518444 ~ 16523666 (+) True pgm3
XM_039782618.1 mRNA downstream 28015 16527989 ~ 16534031 (+) True ccnc
XM_039782711.1 mRNA downstream 36337 16536311 ~ 16544495 (+) True faxca
XM_039782712.1 mRNA downstream 36841 16536815 ~ 16544495 (+) False faxca
XM_039781922.1 mRNA downstream 88876 16588850 ~ 16597991 (+) False tmem63a
TU250012 other upstream 91091 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 525071 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 776910 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 776910 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 829620 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 265571 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 325720 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 793680 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 841863 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 841863 17341837 ~ 17365977 (+) False map7b

Expression Profile