RNA id: TU250247


Basic Information

Item Value
RNA id TU250247
length 525
lncRNA type read_through
GC content 0.42
exon number 2
gene id G184796
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16595940 ~ 16610380 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttttttttttttttaaacacacacaatttattTGCACATCTGTGTTGCGGTCCCAGTTGTTGCTCACATTAAGTTGTCAGAGAGTTCACTTCAAGGGCTTTTTTTATAAACCAGCAGAGACAGAATAGATGGTTCTGGGTGGGGCTGAGCATGCCTTATCAAAAGGATGACAGCTTAATAAACAAAAAGGTAGAATAAATACAGATGGATGAAGCTTTTAGGCCTTTTCCCAGGGCAGTATGACAAAATGTAATCCACTTGAAACTCATCGGATAAAAATGCGCCCACCCACTTCTGTCAAGCTGCTGCACTGATTCATCAGGCTTTCTGTCCTTCAGTGTTTTGTGTAAAGGGGCTTGACACCATAACGCAGGTTGTCCTTGAGTACTGGGTGGCCAACAGCCATGCGCTTCTTACACCACTTTAGTCCGGTTTTATATATTGGTTTCACAGAGTCAATGGACCAGCGAGTCAGGTATCTGCACAACAGAAAATCATTGCTAGTTTAATTTGCACTTCGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636882.1 lncRNA upstream 79607 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 94053 16495957 ~ 16501887 (+) False LOC120546561
TU250223 lncRNA upstream 95966 16493194 ~ 16499974 (+) True LOC120546561
TU250220 lncRNA upstream 101446 16493194 ~ 16494494 (+) False LOC120546561
TU250017 lncRNA upstream 182439 16411676 ~ 16413501 (+) True G184633
TU250330 lncRNA downstream 71515 16681895 ~ 16686079 (+) True vegfab
TU250341 lncRNA downstream 114497 16724877 ~ 16726392 (+) True G184851
TU250480 lncRNA downstream 323316 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 670735 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 678471 17288851 ~ 17292275 (+) True G184995
XM_039782711.1 mRNA upstream 51445 16536311 ~ 16544495 (+) True faxca
XM_039782712.1 mRNA upstream 51445 16536815 ~ 16544495 (+) False faxca
XM_039782618.1 mRNA upstream 61909 16527989 ~ 16534031 (+) True ccnc
XM_039782672.1 mRNA upstream 72274 16518444 ~ 16523666 (+) True pgm3
XM_039781549.1 mRNA upstream 105301 16487014 ~ 16490639 (+) True LOC120546559
XM_039781920.1 mRNA downstream 61206 16671586 ~ 16683281 (+) False vegfab
XM_039781919.1 mRNA downstream 61209 16671589 ~ 16686078 (+) False vegfab
XM_039781921.1 mRNA downstream 61211 16671591 ~ 16686078 (+) False vegfab
XM_039781964.1 mRNA downstream 119683 16730063 ~ 16744830 (+) False LOC120546775
XM_039781962.1 mRNA downstream 119708 16730088 ~ 16744380 (+) True LOC120546775
TU250012 other upstream 193837 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 627817 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 879656 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 879656 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 932366 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 155165 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 215314 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 683274 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 731457 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 731457 17341837 ~ 17365977 (+) False map7b

Expression Profile