RNA id: XM_039781920.1


Basic Information

Item Value
RNA id XM_039781920.1
length 2280
RNA type mRNA
GC content 0.43
exon number 6
gene id vegfab
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16671586 ~ 16686079 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTACCCTGTTATAATGGCCACCAATCATCCACGTCCAGTCTAGtcgccacacacacagccacagtaCGGAGTGTGTCGGACGCGTATGTCCTAACGGAGAGAGCTGACCTGCTTAGAGCGCAGCGCAGTGACAgaggagtgaaaaaaaaagccagtGCAAATAGATAATGTTTTGTGGGACGAGTATCTCTCAGCGCGGTTTTCTTTTTCACTGAACGTCATCCTGGTCCATTGGTTCAAGTAGCACACAGGAGTAGCCTACAAGTTTCCAATGGACAGATACTTGGAAACGGCTGGAGCAACAAGCATGGGATTATATTTGTAATGTGGATTGCTATCCCCGTGCAAGAAAATAAAGGTCTGCTGAGGAACAATGTGAGACGTTTTGCGTCTTGGATTCTCGTGTTTCTGGATATCTTGAAAATCATTGGCAATAGCTGAGAAGGCAGAAGTTATGCGCAAAGGATTGTATGCTCCGACCCCGGGACCAACATGGATTTGCCATTACAACCCCCTGTCCCGTATTTAGACAAATTTTAGCCTGTCcacttgtgttgttgttgttgttgttgtacttgTTGTAAACTTCATGTTTGGATTTTAAAACGTCGCCTGCCTTTGGATTGGATTTCCAACACCATGAACTTTATTGACAGTTTGACACTATTATTTTTGACGCTGTCAGCTGTCAAGAGCGCCCACATACCGAAGGCCACAGAAAGAGGTCCACATGACGTGATCCCTTTAATGGAGGTGTACAACAAGAGTTTGTGTCAGCCTCGGGAGTTGCTGGTGGAGATTCTGCAGGAGTATCCGGAGGAGGTGGAGCACATCTTCATCCCGTCCTGCGTGGTGTTGACTCGTTGCGCCGGTTGCTGCAACGATGAGATGCTGCAGTGCATGCCAACATCCAGCTATAATATAACAATGGAGattaaaagaataaaaccCCAAAGGCAACAAAATGATATTTTCATGAGTTTTACAGAACACAGCGCATGTGAGTGTAGgttaaagaaagaaatgaaagaaCAGAAAGAAAAAAAATCCCGGAAAGGCAAGGGTAAAGGCCAAAAGAGAAAACGAAAGAAAAACCGCAACAAAACAATTCACGATGCGTATGTCAGCTCCGCCTTCTCCACTTACCTGCATCTGAGTGTAGCGCTTCTCATAATTAAGCTCATTTGGGAAGAGCTCATTTGCCCCTTTTAATTTGCACCGTTAGCCACATCAATTAGCATGTTGCTTCTGTGTATTGTCCTAACTTTGTCTCGTCAGTCATGTTTTACATACCCAGAGTATCAGTGTCTAAGTTGCCctgtttgctaacatgtttGCTAACATAGCTTTCGCAAAACTTTACAGCGATAACCAGGGACGTACAGCAGACATTGCCAGCCAAATCCCATATCACAAGAAATGAACCATAACCCATCGCCACCTGTCAAAATACCCATCTAACATCCCCCCAAACCTTACTAGCCCCCAGTTTGCAAGAAAACCACTCTCTATGTTTGAGACTGGGATGATGGTGGGGATGAGATATAGCAGCGTAGCATGAAAAACAGTAGAAACTTGAGTTGCTCCTAACATCTTGTCAGATAGCTAGATTTCTGATTGATAATGGACATGTTTAAATAAGCAGGAATAAACAGATTGGCTCTTAGCTGTTACTTGAACCCTCTACTGAAACAAGATCACAGCTCCACCAGCATTGCTTTGCAGACCGGCTCATAACTGTTGTGGTATCTGTGCTGGAATCACCAGGATTGTAATCACGGCCTTGTGTTCAGTGTTGAGTCTGTGCCGCTTTGCTGTGTCTCGTACCCGTCTCCATTCCACCCTTTGTTCTTTTCATCTTTATAAACAGGTTGTGCTGTCCTGTGCATAATGCTGGTACTTTTTATGTAATGTAAAGATATGAGTGATGGCTATCTATtgacttttctttgtcttttttttttcttttgctactGGGGATATGTAAACCAGCAACTTGTTTAGCAACtcctgttttgtgtctttgcCTGCTTTTGTCTCTGAAACAAAACCACCCATATTTTATTCAAAAATAATATAAAGATGATCTCATGTTTCTTCAGAGCTCATACTGTGAAAAAAtacatgtctgtgtttttatttgtacattGAGATATAAATGGAGTATCTGAGCCTTCATCTGTCAATTTTCAGCCTCTGTTCTTATAATCTAATGTCTCTCTGTTGGAATCATAGTCTGCAGTTTTCActcaataaaatgaaatatgtcTCGACGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250247 lncRNA upstream 61206 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 155253 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 169699 16495957 ~ 16501887 (+) False LOC120546561
TU250223 lncRNA upstream 171612 16493194 ~ 16499974 (+) True LOC120546561
TU250220 lncRNA upstream 177092 16493194 ~ 16494494 (+) False LOC120546561
TU250341 lncRNA downstream 41596 16724877 ~ 16726392 (+) True G184851
TU250480 lncRNA downstream 250415 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 597834 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 605570 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 605570 17288851 ~ 17291556 (+) False G184995
XM_039781926.1 mRNA upstream 61860 16605386 ~ 16609726 (+) True rsph9
XM_039781925.1 mRNA upstream 61860 16605539 ~ 16609726 (+) False rsph9
XM_039781924.1 mRNA upstream 72124 16590045 ~ 16599462 (+) True tmem63a
XM_039781922.1 mRNA upstream 73595 16588850 ~ 16597991 (+) False tmem63a
XM_039781923.1 mRNA upstream 73595 16589193 ~ 16597991 (+) False tmem63a
XM_039781964.1 mRNA downstream 46782 16730063 ~ 16744830 (+) False LOC120546775
XM_039781962.1 mRNA downstream 46807 16730088 ~ 16744380 (+) True LOC120546775
XM_039781963.1 mRNA downstream 50696 16733977 ~ 16744830 (+) False LOC120546775
XM_039781814.1 mRNA downstream 62892 16746173 ~ 16763444 (+) True wdr26b
XM_039781862.1 mRNA downstream 82264 16765545 ~ 16779935 (+) True si:ch211-57i17.1
TU250012 other upstream 269483 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 703463 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 955302 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 955302 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 1008012 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 82264 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 142413 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 610373 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 658556 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 658556 17341837 ~ 17365977 (+) False map7b

Expression Profile