RNA id: XM_039781921.1


Basic Information

Item Value
RNA id XM_039781921.1
length 2990
RNA type mRNA
GC content 0.41
exon number 7
gene id vegfab
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16671586 ~ 16686079 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTGTTATAATGGCCACCAATCATCCACGTCCAGTCTAGtcgccacacacacagccacagtaCGGAGTGTGTCGGACGCGTATGTCCTAACGGAGAGAGCTGACCTGCTTAGAGCGCAGCGCAGTGACAgaggagtgaaaaaaaaagccagtGCAAATAGATAATGTTTTGTGGGACGAGTATCTCTCAGCGCGGTTTTCTTTTTCACTGAACGTCATCCTGGTCCATTGGTTCAAGTAGCACACAGGAGTAGCCTACAAGTTTCCAATGGACAGATACTTGGAAACGGCTGGAGCAACAAGCATGGGATTATATTTGTAATGTGGATTGCTATCCCCGTGCAAGAAAATAAAGGTCTGCTGAGGAACAATGTGAGACGTTTTGCGTCTTGGATTCTCGTGTTTCTGGATATCTTGAAAATCATTGGCAATAGCTGAGAAGGCAGAAGTTATGCGCAAAGGATTGTATGCTCCGACCCCGGGACCAACATGGATTTGCCATTACAACCCCCTGTCCCGTATTTAGACAAATTTTAGCCTGTCcacttgtgttgttgttgttgttgttgtacttgTTGTAAACTTCATGTTTGGATTTTAAAACGTCGCCTGCCTTTGGATTGGATTTCCAACACCATGAACTTTATTGACAGTTTGACACTATTATTTTTGACGCTGTCAGCTGTCAAGAGCGCCCACATACCGAAGGCCACAGAAAGAGGTCCACATGACGTGATCCCTTTAATGGAGGTGTACAACAAGAGTTTGTGTCAGCCTCGGGAGTTGCTGGTGGAGATTCTGCAGGAGTATCCGGAGGAGGTGGAGCACATCTTCATCCCGTCCTGCGTGGTGTTGACTCGTTGCGCCGGTTGCTGCAACGATGAGATGCTGCAGTGCATGCCAACATCCAGCTATAATATAACAATGGAGattaaaagaataaaaccCCAAAGGCAACAAAATGATATTTTCATGAGTTTTACAGAACACAGCGCATGTGAGTGTAGgttaaagaaagaaatgaaagaaCAGAAAGAAAAtGTTTGTGAGCCATGTTGTGATCACTGCTCAGAGAGGAGGAAGCGCTTGTTCGTGCAGGATCCCGCAACCTGCCGGTGCTCCTGCAAACACACCGACGAATACTGTAAAGAACGCCAGCTAGAGCTCAACGAGAGGACCTGCAAATGTGACAAGCCAAGGAGATGAGAGAGGTGGCAGCACCAGATGTACAAGATGAAGGAATATTCTAGAGATATTTCACAGCACAGCACTTTGACCTTTGAACCGTAAGCTTGTCTTTTCTATGGAAAGCATTCCCCTTGAGAGAGAACACTAAGAAAGACTGAAATGAAGTTTCCTCccactgtatatctgtgtgtatatagaccatgataaaagaaaaaaaaaagtacagaatTGTTATGCTgctacagaaacaaataactAAACCCATCATTAGACTAAAAGCAAATTGCCGCCATGTGGTTTAGCATTTTCTAACAGGCTTGCGATGCAGGTGTAGTCTTGTTGTCAATTCATTGTATGCAATTACTTCACTGGATCTCTACTGTGGTTTTGTGTCAATCATAAAATTGCAAACCTCTCAATCTAAGATATATTTAACGGCTAAAATAGCGGGCGAGGCTGAAGAGGACATGGAAGTGCATTCTCCTTTCAAAAATGATGGATGGATTATCATCGGTCGATGTCTACTTTTGCTTTTGGAGTATAACAGCAGGACAACTGGGACATCTGAATCTGTCTCTATGTATTTGTTCCTGTACGGAAATGCAGGACTGACGTGGATCAGCTTGATGGAGAAGAGACTCTGATAATGTCATATGTTCTTTTAAAGGGATACTGGTTGTCAATATAGTTTTGCTATGTCCTACATGAAAACCACTGAAAACATCATATACTGTAGTTTGATTCCATTTGAAAAACTGTGCCTCACAAAATGTACTGAGAAATCTTTCGAgtgctttttaaattattttttgtttccttttttcagGAGAGAGTATGGTCAAAGTGGTTTGTTTAGTGGTGGTTTAACTGAATACAGAATCTATTGATTACATATCTTCTTCTCTGAACGTGTACATACTTAATATCCCTTTATGCCATAGTCCATTCTAGATAATTTATAATGTTAGAGTATTTTTCAGTATTCAGTCTTCTACCCATATTTAATTTGGTCTATTTATATATGCAGTGTTATGTACCTGTGGCAGTCCTATCTCCCCTTTGTGTGTGACTGATGGCTATTCTCAGCATGGAGACTCTATGCTTTTCTacgaaacaaacaaaaaacatcaacaaaaaatctgaaaatttGTTAACATTCCCTAAATGGATCGTTTGTTCTGGTGTACTCATGACATCTCTGGATTTTTCTACCCCTCTTATCTAAGGGGGTGGGTACTGTGTAGGATTTTAacgtgtgtatctgtgtgtgtgtgtttgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgttagtaagttGTATTTAAGTAGTATGTTTTAAATTTGGATAACAATCTGCATCCTTTCTGCCATCAGCCTTAGAGCCATCATTATTagttctctttgtctctccttcACTATTAACATGTTTTCTGTGTCTATGTAAAACAGTAAAgcatatttattttcaaattatattgtttttatataaaataaggaaaaggttgctgtgttgtgaatgctgtgttttcaagaAGTTTAATTAGGCAACATGaggtttccatgtttttgtgcGACAAGTTGATACTCACACATAAGAATCCCTGCAGAATGTAATCTGAAAGAAAATACAACAGAGAAATAAGAAACACCCGCACGCTTTTCATGACGGACAGACAGTTATTCAGCCTTATGAATAAAATGGCACTTTGAA

Function

GO:

id name namespace
GO:0051781 positive regulation of cell division biological_process
GO:0016020 membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250247 lncRNA upstream 61211 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 155258 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 169704 16495957 ~ 16501887 (+) False LOC120546561
TU250223 lncRNA upstream 171617 16493194 ~ 16499974 (+) True LOC120546561
TU250220 lncRNA upstream 177097 16493194 ~ 16494494 (+) False LOC120546561
TU250341 lncRNA downstream 38799 16724877 ~ 16726392 (+) True G184851
TU250480 lncRNA downstream 247618 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 595037 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 602773 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 602773 17288851 ~ 17291556 (+) False G184995
XM_039781926.1 mRNA upstream 61865 16605386 ~ 16609726 (+) True rsph9
XM_039781925.1 mRNA upstream 61865 16605539 ~ 16609726 (+) False rsph9
XM_039781924.1 mRNA upstream 72129 16590045 ~ 16599462 (+) True tmem63a
XM_039781922.1 mRNA upstream 73600 16588850 ~ 16597991 (+) False tmem63a
XM_039781964.1 mRNA downstream 43985 16730063 ~ 16744830 (+) False LOC120546775
XM_039781962.1 mRNA downstream 44010 16730088 ~ 16744380 (+) True LOC120546775
XM_039781963.1 mRNA downstream 47899 16733977 ~ 16744830 (+) False LOC120546775
XM_039781814.1 mRNA downstream 60095 16746173 ~ 16763444 (+) True wdr26b
XM_039781862.1 mRNA downstream 79467 16765545 ~ 16779935 (+) True si:ch211-57i17.1
TU250012 other upstream 269488 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 703468 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 955307 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 955307 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 1008017 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 79467 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 139616 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 607576 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 655759 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 655759 17341837 ~ 17365977 (+) False map7b

Expression Profile