RNA id: TU250565


Basic Information

Item Value
RNA id TU250565
length 6176
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id LOC120546618
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17430020 ~ 17447803 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTTTGACTtcctaacaacacacacacttccaaacTTTTAATCTGACTTTTGCTGACCTTCCCCACTagtaaagagaaagagaggtgcTGTAGCTTACAAGAAAGCAAGTACGCTGGCTGGTGTATgggaaaatgtttaaaatgtgtggAACTAGGTGAAACAGAAAAGGCCTCCTAACATATGTGAGTTTGATGTGTAATGTCACTTGCCTACGCGCTAGTAttcaaacatgcatgtgtgtgtgtttgtgtctgaaagACTTAGAAAGACCTTTTACAGCATCCCTCATACTCGTGCCCAAGCTGATATCACTCACTTTCTGCCGTCTTCTCCTGTCCATTCTCACTGCATCTGTTCATTCAGACCCAAGTCCCATTTGAACAATCACATGTCTTGCCTCTATGACAGCAGGTTTTTCACCACCACTTTTGAGCATAGTTTAAAGACCCATTTTTTCCTAGGCAAAGTTTCACCATGAATTGTCCCCTAATCCTTCTAGagaggtatgtaatatgtattttttatattaatgaaataCTTTGCGAGACGTggttttaaatttaatatatgaATTTATGTTGGTGGCTAAAACAAAGTTTACTTTGCTTCTCCATCTCCATGTTACAGTTATTTATCTTATATAGCAACAGATACATACATTACCTCATCGCTATGCATCCTGCAAACagctgtttaaaaagaaaaaattatgttaaaaataagttgcgtctttctttcactcttttcCAAAACAAATGCACCCGCTAGCCAGATTGAGATCTTTATGACAAGAGGCAGTGGTGTTCATGGAAATACTACCTCTTTTTTCCACAGGGGCCGCCAAAATCTACACAAAATGAAAGTTCCTTGTAGTTGCTTtagtgccctgccacacaaaaccgtttttacttgcattttttgaaatatgttaggttcATATGCGTTTGTGTTATGTTgcgaatgtgaaaatgaactgctactgtacctcctctgtcagatctagccactgaaaagaaataagcagagaaatcaggccaattacaaaagctggtcagtctgacatcatattgcctgaacTCATTACTATtaatgagctcgcccagttgcgctgggtaaaggatgcttatagccaggctctcattggctagttgttagccaatcagagccaagcaacttagctcgttgaatattaatgagaactggcacaaatcgagctgagtctacctgcaggctttctataccatgctagaatggcttgaaacaaggtaaccaaggcattttttccacaaaaaatgttacagagtccatggtagaacttcagacattaccacaaagtattgaaatatgtgtggcagggcacctttaacaccCATATTGTGGAGTTGTTGAGAAATTATCCTCTGGACTTGGTCATAGTGACGTAAAAATAACGTGAATCGGTGTGTTATGCAGTTAATAACTCTGTTAATTTATAAAGATGTATTCTATATGCTTTGTTCAAAATATCCTTTAAAAACCATTGTAACATGGACATCTGCATTCATTTCTGCACTGTTCAACATCGGAAACTAAATGCACGTACAGCTGGAGACCACACTTTCCTTCTCACTCTCCTTGATTTCCTTCCTTGAAGAAGATACCGCTTACTGAAAATCATGTGACTTCAGGAAAAGTCATTCACTTAACTTGCCTGGGGAGTTTGATACGTAAGGGCTGGCAGCAGATGTACTCTAGAGatacaatgaatgaatgaataattttattattgtgtcaacataaattaaacaaataaaccttGTCTTTTTTGGAATGCTTTTGAGACAAAAGTCACCAACTTATATCCATTAATTTAAACAACATTAAATGCAAATGTATTGGATCTTTTGATTGTTAATACTGCTTTAATTATCACAAAGGCCATTGCAAGATGCCTCTATGAATTGACTACCTTCCTCAATTAAGGAAGGATGATTAAAAACCCAGTGATGTaagaaaagagcagaaaagaaaCCGGGTCAGGGAGAAGTAGTAGCACATGTGTTGTGTACAACCAAAACCTCAGAATCCAGCTGAGCGAGAACAGGCGAGCGTTTCCTAACACCGTGGCGAGTCCTGACACGATGCCTGATCGTGACACTCAGCCGGGGATGGGATCGCAGAACAGGGAGTGAGACTAGACCCAGAAAAACGGGATTCCACTCTCACTCCCTGCTCACGGGGCAACATACCTCTCCTAAGAGTTTCCCACGAGAAAAACCTCCGGCGTTTTTCGGTCTAGGTagaagcaagaaaaaaaagagagacagggagatagatatatagatagattatAATTGGAGCAGCATGGGAAGACTAGGGGCATGTTTCGTTGTATTACAGGGGTGGGTGGGGTGAGGTTCTGACAGCAGACACACTCAGAGGGATTAGGTGTGAGCTTCATGAGAAAAACCACTGATAAGCATCAGCTGGGCATCTCTGGACCACAAGGTTTTCATAACTGTCTACTAAGTTTTGTTCAGCTTGGAGACGGGATAACCCTGTGGCTTTATCAACATGTCAGGGTGAGAAACCAGGAGAACACCTGAGTCAATGTGAGTGGTTAAGTACACCTTTAAAGCTGTTTAACATGTagacaaacaaatacacatatgTACAATATACTATAGGGTGTGGTTCATTCTCCTGCCAATTGCATCTCATGTTACCCACTAATGTAGCAGGAATTGCCGGtgatgtgactttttttttttaatgtctgctctcttctttccttcctcctcccaaCGCCTCCATCCATCCCTCAGTGCCTTTGTTGGGAGGATGAAGTCATAGCTGTCAAACCTGTTctttgtcttcatttcagatggaTCTGGAGGGATTTCTTTTCTTCACCACCTCTTCCTGCTCATACAGGAACATACAGGGGAATTATTATGAGTAAGTTGATTATTAGACCTTTAATccctgtatatgtatatatactgtgaATGCCCCATCAATTAAGTACATACTCTAAGGGGTGAGTTCAAGCTATTGTTGACTCAGCCAAGATGCCCTCAAACCAGGCTACTGACCGACCTTTGACCTACCTACTCAGGGAGCAACTAAAACAAGAACTCTAAAACTCtaaaagtattatcagcaaactCTACTTAACGGCAGGGTTTGTAATGTTGACAggctagcaagatttgaaagtagcatctcgTCTAACCCCTCCCCTGTCCTCGGGGCTCCCCCCAAAATAGTCAAGATGGAGTCTTTTAACTATTTCTTTTAACTTTTGGGTACTTTTATCTgtaacaatgcatcatattttagaaGCTGCTCTTTTATTTTGGATGAAACGATATACCTGTCAAATAaacgtagtggagtagaagtataaagtagcacaaaagaaaatactcaagtaaagtacctcataattgtacttaagtacagtacttaaagTAAATACTACTGTCACCACTGATTGTTTTAAAATCCTTAATGAACTGGTAAGACATCACATTTTATTTACTTACTCACTAAAGGGAAAACGTGTCTCCTAGCCAAGAAGAAATTTTCCATTGTAGGGCTGACTCACTCTTTGCATCTTATTTGCATAGTTTTGCATTCTACCCTGTTGCTTGCCAAGTTATCCATTCAGCtgtatatttgtaaaatattgtgcttttctgcGTGTGCCTGAAGGTACTACATTATGATTTGAAGTAAATCTCAAACTATGTTTTTTAACTGGTGGTACCTTCTCCTCCCTCGGACAGACAGCTTGTGGTAAAGTCACTGTGAACCTGAGGCTTACAGTAAAGgatctttgttgttgttgctgtttcaTCTCTTGTGCAAACACAAGCAAATGAACCTTTTAGGCGTTTGCACAGCTACATCCTGTTCCAGAGaatcccccccccaccaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaaaaaaaaaacacatagcaCTTATGTTTAGCACCAGGGGCCAGATAGATGTTGTCTCGGGGTCCGGCTACTGTGGGGGGCTTCTTTACCTTTAGAGTtaccagaagaagaagaaaagatttGTGCTGTAGTGGTTTGTTATTTTTAGGAATGAAGAACCCAATTTAATTTGAATAACTGCATTGTGCGCGTTATGACTGTAGACCAACAAAAACATCCCTAGGGTATTGTATAATGTCCACTTTTTGCAATAACTCTGAATCTGACCTGACATGTCTTCCTTAGATTCTTCTCTggtcaatattattatattacaaagTCAGAATAATACAAATGCTACAAAGACCGGGTGTTCTGACTCAGTCACCAGATGTAAATTCAACTTTTTGAAGCTACTTCACATTAATACTCATCCAGCGGTGACGGCTTGCTTTGTAACAGTATATCATATAAACCAATACTATGCACTCATTTACATATGTAGCATTGAAACCACCGAAAATGCATGCCAACTGCATGGATGGCAGCAAATTTATCTTAAATGGTGAAATTGATGAGAAAATGTAGTGGATTCCCTCTGATAGGCCCAAGTGTTGGCGAGCATCTGTAGTGCTTATGATGATTATTAATTGAGActttaaagacaaaaacaagttgCATGAATTAAACGTCCACCGCTGCTTCTGCTGAAGAGACAAAAAATGGCGGCAGACGAAAACATCAGATCTGTGGAACGATAAGGAGACTGTAACCTATCTCAAATTAATACATGAAACAAACATAAAGGCCATATTTCCATCAGGTTTTCCCAATCGTTTTTGTTTAGGATTTAGCTGGCGCTCTTTTAATTACATAATCTTGTTGCGTCCTCTTCTGCAATGGTTTAATGGCAACCGACTGGAGAATTAGTGCAACCAGCTGTCTAATGAAATTTGCGCTACATTTGGATGGAAGCTTGatagaaagagaacagaaaacacTCTTCCTCTTtgagatcatttattttcaactCGGCACTGTTGTCCAGCGATGGCACAATTTCTCTCTTATAGACCAGGTGCCAAATATGAATCAATGTGACTGTAATAGTGTCATTTCTGAATGAAGCCATGAcggacatttctgtttttttatattttgaaaaaagtgcagATGTTTCATTCAGTTGGAGGATGATCAAGGTAAGAAACTGACTTTTAAAGAATGTTAAAGACAGATTTTTTACGCTAAAGGGAAATATACAGAGTGGTAGCCACATGACCATTCATGGATGTAGGATCTTTTGTCACGATTATAACTTCAGCAATAACTTCCTCGTGACACAATCCTATCAAAAGTTTCTGATGAAGTGTTACACTACGCAAAGTGCTGGTTCAACATGTGTGTACTGTGAGTGTTTAACTTATCACGGGGTGgtgcatgttcaaactcgtcCAGGATTCACAGAAAAGACaacacagtgtttgtgtgtattacagagacacagatacagagagagaagaagaggaggaactCATCCATCTTACTGTAATCAGCACTTACCCATGTTCCTTAAGTGTAAAGAACTTACATCTTCCTTACACTTATGATGTTTTGTCTTTAagtttgtttcttcttttttcacttAGGCCTCCTTCTTTTGGTACCTGTTAGTCCTGCAGAGCGAGTAGCTAACAGTTCCATCAATCACACCTTGTGATCATCTTGGCACTTATTGTAAACCATACACACATCTTCAACTTCACAACTTGCCCTCACACACATCCTGTACTTACTGAAATGTGTAAAGAAGAGCATCAGAAGGGGCCCTGTTGCTgtagcacatacacacagtctaACCCAGTTCCAAGTGCCCTGCGACACATGCCCACACACTTTTTGTATGTGCAAGTGccttgtatgtgtttttgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatcaaggccctgtgtttcctgttttgcaATCCTCACCATGCCCTCCAAGAAAACGTCTGCTGCTGGCTGATTCAGGAACAGCCGGTtttctctgcccccccccctcggAGAGGGCATTCAACACTACGGGATCTGCAGCCtccatttgtttaaataaaaatctcatatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250569 lncRNA upstream 541 17438689 ~ 17440600 (+) True G185015
TU250579 lncRNA upstream 44093 17393534 ~ 17397048 (+) True G185022
TU250541 lncRNA upstream 141721 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA upstream 148866 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA upstream 149585 17288851 ~ 17291556 (+) False G184995
XR_005636836.1 lncRNA downstream 2214 17449530 ~ 17453062 (+) True LOC120546214
XR_005636837.1 lncRNA downstream 2215 17449531 ~ 17453062 (+) False LOC120546214
TU250641 lncRNA downstream 4450 17451766 ~ 17453062 (+) False LOC120546214
TU250646 lncRNA downstream 4450 17451766 ~ 17453062 (+) False LOC120546214
TU250648 lncRNA downstream 4450 17451766 ~ 17453062 (+) False LOC120546214
XM_039781679.1 mRNA upstream 11139 17407774 ~ 17430002 (+) False LOC120546616
XM_039781678.1 mRNA upstream 11139 17415923 ~ 17430002 (+) True LOC120546616
XM_039781013.1 mRNA upstream 49422 17378182 ~ 17391719 (+) False mtfr2
XM_039781169.1 mRNA downstream 32882 17480198 ~ 17485596 (+) False hbs1l
XM_039781168.1 mRNA downstream 32896 17480212 ~ 17504874 (+) True hbs1l
XM_039781170.1 mRNA downstream 59638 17506954 ~ 17515583 (+) True aldh8a1
XM_039781637.1 mRNA downstream 113537 17560853 ~ 17596054 (+) True sgk1
XM_039781639.1 mRNA downstream 140474 17587790 ~ 17596054 (+) False sgk1
TU250558 other upstream 75164 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 75164 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 145440 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 607827 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 664540 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 221856 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 235242 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 469537 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 573647 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 573647 18020963 ~ 18052071 (+) False fndc4a

Expression Profile