RNA id: XR_005636900.1


Basic Information

Item Value
RNA id XR_005636900.1
length 5103
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC120546618
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17430020 ~ 17447803 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaaaaatgttacagagtccatggtagaacttcagacattaccacaaagtattgaaatatgtgtggcagggcacctttaacaccCATATTGTGGAGTTGTTGAGAAATTATCCTCTGGACTTGGTCATAGTGACGTAAAAATAACGTGAATCGGTGTGTTATGCAGTTAATAACTCTGTTAATTTATAAAGATGTATTCTATATGCTTTGTTCAAAATATCCTTTAAAAACCATTGTAACATGGACATCTGCATTCATTTCTGCACTGTTCAACATCGGAAACTAAATGCACGTACAGCTGGAGACCACACTTTCCTTCTCACTCTCCTTGATTTCCTTCCTTGAAGAAGATACCGCTTACTGAAAATCATGTGACTTCAGGAAAAGTCATTCACTTAACTTGCCTGGGGAGTTTGATACGTAAGGGCTGGCAGCAGATGTACTCTAGAGatacaatgaatgaatgaataattttattattgtgtcaacataaattaaacaaataaaccttGTCTTTTTTGGAATGCTTTTGAGACAAAAGTCACCAACTTATATCCATTAATTTAAACAACATTAAATGCAAATGTATTGGATCTTTTGATTGTTAATACTGCTTTAATTATCACAAAGGCCATTGCAAGATGCCTCTATGAATTGACTACCTTCCTCAATTAAGGAAGGATGATTAAAAACCCAGTGATGTaagaaaagagcagaaaagaaaCCGGGTCAGGGAGAAGTAGTAGCACATGTGTTGTGTACAACCAAAACCTCAGAATCCAGCTGAGCGAGAACAGGCGAGCGTTTCCTAACACCGTGGCGAGTCCTGACACGATGCCTGATCGTGACACTCAGCCGGGGATGGGATCGCAGAACAGGGAGTGAGACTAGACCCAGAAAAACGGGATTCCACTCTCACTCCCTGCTCACGGGGCAACATACCTCTCCTAAGAGTTTCCCACGAGAAAAACCTCCGGCGTTTTTCGGTCTAGGTagaagcaagaaaaaaaagagagacagggagatagatatatagatagattatAATTGGAGCAGCATGGGAAGACTAGGGGCATGTTTCGTTGTATTACAGGGGTGGGTGGGGTGAGGTTCTGACAGCAGACACACTCAGAGGGATTAGGTGTGAGCTTCATGAGAAAAACCACTGATAAGCATCAGCTGGGCATCTCTGGACCACAAGGTTTTCATAACTGTCTACTAAGTTTTGTTCAGCTTGGAGACGGGATAACCCTGTGGCTTTATCAACATGTCAGGGTGAGAAACCAGGAGAACACCTGAGTCAATatggaTCTGGAGGGATTTCTTTTCTTCACCACCTCTTCCTGCTCATACAGGAACATACAGGGGAATTATTATGAGTAAGTTGATTATTAGACCTTTAATccctgtatatgtatatatactgtgaATGCCCCATCAATTAAGTACATACTCTAAGGGGTGAGTTCAAGCTATTGTTGACTCAGCCAAGATGCCCTCAAACCAGGCTACTGACCGACCTTTGACCTACCTACTCAGGGAGCAACTAAAACAAGAACTCTAAAACTCtaaaagtattatcagcaaactCTACTTAACGGCAGGGTTTGTAATGTTGACAggctagcaagatttgaaagtagcatctcgTCTAACCCCTCCCCTGTCCTCGGGGCTCCCCCCAAAATAGTCAAGATGGAGTCTTTTAACTATTTCTTTTAACTTTTGGGTACTTTTATCTgtaacaatgcatcatattttagaaGCTGCTCTTTTATTTTGGATGAAACGATATACCTGTCAAATAaacgtagtggagtagaagtataaagtagcacaaaagaaaatactcaagtaaagtacctcataattgtacttaagtacagtacttaaagTAAATACTACTGTCACCACTGATTGTTTTAAAATCCTTAATGAACTGGTAAGACATCACATTTTATTTACTTACTCACTAAAGGGAAAACGTGTCTCCTAGCCAAGAAGAAATTTTCCATTGTAGGGCTGACTCACTCTTTGCATCTTATTTGCATAGTTTTGCATTCTACCCTGTTGCTTGCCAAGTTATCCATTCAGCtgtatatttgtaaaatattgtgcttttctgcGTGTGCCTGAAGGTACTACATTATGATTTGAAGTAAATCTCAAACTATGTTTTTTAACTGGTGGTACCTTCTCCTCCCTCGGACAGACAGCTTGTGGTAAAGTCACTGTGAACCTGAGGCTTACAGTAAAGgatctttgttgttgttgctgtttcaTCTCTTGTGCAAACACAAGCAAATGAACCTTTTAGGCGTTTGCACAGCTACATCCTGTTCCAGAGaatcccccccccaccaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaaaaaaaaaacacatagcaCTTATGTTTAGCACCAGGGGCCAGATAGATGTTGTCTCGGGGTCCGGCTACTGTGGGGGGCTTCTTTACCTTTAGAGTtaccagaagaagaagaaaagatttGTGCTGTAGTGGTTTGTTATTTTTAGGAATGAAGAACCCAATTTAATTTGAATAACTGCATTGTGCGCGTTATGACTGTAGACCAACAAAAACATCCCTAGGGTATTGTATAATGTCCACTTTTTGCAATAACTCTGAATCTGACCTGACATGTCTTCCTTAGATTCTTCTCTggtcaatattattatattacaaagTCAGAATAATACAAATGCTACAAAGACCGGGTGTTCTGACTCAGTCACCAGATGTAAATTCAACTTTTTGAAGCTACTTCACATTAATACTCATCCAGCGGTGACGGCTTGCTTTGTAACAGTATATCATATAAACCAATACTATGCACTCATTTACATATGTAGCATTGAAACCACCGAAAATGCATGCCAACTGCATGGATGGCAGCAAATTTATCTTAAATGGTGAAATTGATGAGAAAATGTAGTGGATTCCCTCTGATAGGCCCAAGTGTTGGCGAGCATCTGTAGTGCTTATGATGATTATTAATTGAGActttaaagacaaaaacaagttgCATGAATTAAACGTCCACCGCTGCTTCTGCTGAAGAGACAAAAAATGGCGGCAGACGAAAACATCAGATCTGTGGAACGATAAGGAGACTGTAACCTATCTCAAATTAATACATGAAACAAACATAAAGGCCATATTTCCATCAGGTTTTCCCAATCGTTTTTGTTTAGGATTTAGCTGGCGCTCTTTTAATTACATAATCTTGTTGCGTCCTCTTCTGCAATGGTTTAATGGCAACCGACTGGAGAATTAGTGCAACCAGCTGTCTAATGAAATTTGCGCTACATTTGGATGGAAGCTTGatagaaagagaacagaaaacacTCTTCCTCTTtgagatcatttattttcaactCGGCACTGTTGTCCAGCGATGGCACAATTTCTCTCTTATAGACCAGGTGCCAAATATGAATCAATGTGACTGTAATAGTGTCATTTCTGAATGAAGCCATGAcggacatttctgtttttttatattttgaaaaaagtgcagATGTTTCATTCAGTTGGAGGATGATCAAGGTAAGAAACTGACTTTTAAAGAATGTTAAAGACAGATTTTTTACGCTAAAGGGAAATATACAGAGTGGTAGCCACATGACCATTCATGGATGTAGGATCTTTTGTCACGATTATAACTTCAGCAATAACTTCCTCGTGACACAATCCTATCAAAAGTTTCTGATGAAGTGTTACACTACGCAAAGTGCTGGTTCAACATGTGTGTACTGTGAGTGTTTAACTTATCACGGGGTGgtgcatgttcaaactcgtcCAGGATTCACAGAAAAGACaacacagtgtttgtgtgtattacagagacacagatacagagagagaagaagaggaggaactCATCCATCTTACTGTAATCAGCACTTACCCATGTTCCTTAAGTGTAAAGAACTTACATCTTCCTTACACTTATGATGTTTTGTCTTTAagtttgtttcttcttttttcacttAGGCCTCCTTCTTTTGGTACCTGTTAGTCCTGCAGAGCGAGTAGCTAACAGTTCCATCAATCACACCTTGTGATCATCTTGGCACTTATTGTAAACCATACACACATCTTCAACTTCACAACTTGCCCTCACACACATCCTGTACTTACTGAAATGTGTAAAGAAGAGCATCAGAAGGGGCCCTGTTGCTgtagcacatacacacagtctaACCCAGTTCCAAGTGCCCTGCGACACATGCCCACACACTTTTTGTATGTGCAAGTGccttgtatgtgtttttgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatcaaggccctgtgtttcctgttttgcaATCCTCACCATGCCCTCCAAGAAAACGTCTGCTGCTGGCTGATTCAGGAACAGCCGGTtttctctgcccccccccctcggAGAGGGCATTCAACACTACGGGATCTGCAGCCtccatttgtttaaataaaaatctcatatcacaaagcttttattataTGGTTTTATGTTACTGTGCCTTTCGTCAGACAATAAACACAGTTATTACGATCCAAACCCTTACAAATTATCCAGTATAACTTGATTTTAGCCTGCAATAAATTCCAAAGCTGAGCTTAAAAATACGTGTTGAGGGAGAAAAGGAAGCACATTTTAGATGCAATTCATTGTCCATGCTTCTCATTTTTAGCTGTCAGCCTTTGATTTATGCCGGCTGTATTGACTTGAACTGTCAGTGACCAATTTTAtcagctgtagctagctaactaattAAGCTAACTCGACCAGTTGGTTGAAAACACCTTCTCCAGTCGCTTCCTTCTTCCAGCTGACTTGTTCTAAGATAAGAATCCTTTAAAATGCACTTGATGGCTACATACATGATAAATGACTGATGCTAAAGCTACCAAGGCAAAAAGTGTCCATGTAGAATATGTTGTATTGCAGTGTAGAACAAAGGCTGGTACAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250569 lncRNA upstream 1829 17438689 ~ 17440600 (+) True G185015
TU250579 lncRNA upstream 45381 17393534 ~ 17397048 (+) True G185022
TU250541 lncRNA upstream 143009 17281115 ~ 17299420 (+) False G184995
XR_005636836.1 lncRNA downstream 1727 17449530 ~ 17453062 (+) True LOC120546214
XR_005636837.1 lncRNA downstream 1728 17449531 ~ 17453062 (+) False LOC120546214
TU250641 lncRNA downstream 3963 17451766 ~ 17453062 (+) False LOC120546214
TU250646 lncRNA downstream 3963 17451766 ~ 17453062 (+) False LOC120546214
TU250648 lncRNA downstream 3963 17451766 ~ 17453062 (+) False LOC120546214
XM_039781679.1 mRNA upstream 12427 17407774 ~ 17430002 (+) False LOC120546616
XM_039781678.1 mRNA upstream 12427 17415923 ~ 17430002 (+) True LOC120546616
XM_039781013.1 mRNA upstream 50710 17378182 ~ 17391719 (+) False mtfr2
XM_039781169.1 mRNA downstream 32395 17480198 ~ 17485596 (+) False hbs1l
XM_039781168.1 mRNA downstream 32409 17480212 ~ 17504874 (+) True hbs1l
XM_039781170.1 mRNA downstream 59151 17506954 ~ 17515583 (+) True aldh8a1
XM_039781637.1 mRNA downstream 113050 17560853 ~ 17596054 (+) True sgk1
XM_039781639.1 mRNA downstream 139987 17587790 ~ 17596054 (+) False sgk1
TU250558 other upstream 76452 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 76452 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 146728 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 609115 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 665828 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 221369 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 234755 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 469050 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 573160 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 573160 18020963 ~ 18052071 (+) False fndc4a

Expression Profile