RNA id: TU250648


Basic Information

Item Value
RNA id TU250648
length 1040
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC120546214
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17449530 ~ 17453062 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACTCCTGCTTCTCTTTTCCACGCACACTCATTTGTCTCGCTTGCCTTGACTTCCACTGCCGTAATGTCCACTGTACAAGCATGTGGACGTCCATCAGGGGTAAGATCAAGCTTTttttcaggaagacaggaaatgacaggtactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttagaggtGTGAGCATCTGCAAGAGGATAGATAGAAAGCTGGTTTTAACAACACAGAGATAATTTGCTTAACTCAGCTGAGCTGGGCTGCGGGTGTGTGTGGTGAGAATATGTGAATGCCTGCTCAGAGAGAATGAGTGTGAAAGCATTGCAACAGTTTTTTGCTGCATTGTTTTTTGCCATCACTATACATATACATGAAAAGCAGGTGTGTGACTAATCTTCCTGTTTAGGTATGCATGCGTATACAGGATGGACACTAGCTACAGCACTTGTGCGTGAGCTTTCATACACgaatgtgtgtgtccatgtattTGTAGCGACGGTGCGAACACGCATGCGCTACCGGGAAAATAGTCCTCACAGCTTATTTGGATATTAGTGTCAAGCGGAGCCGCATTCAGGCTCTGTGTCCCCGCTTGCTCTCTAACACTGTCTCTTCTTTGAGGAATATTATCCAAAACCGACCTTTCACCTTTAACTTTTTCTCTGCTTTTATTGGACTTTTCATCCCCAAATGGCAGGAACAAAACTCTGGGAGGAATTGGGAATCCCCTGCTTAACGGCTTCTTTGATAAACGAAAGGTAGCGAGCTGCACCCAGCAGATGattattctttgggcatttctgcctttaatcaCCAGGAcagcatgaaaggggagagagacatgcagcaaaCCTGCCGCGGGTTCCAACAGAAATCCTTTCTGAGCTTTATGTTATTGCTATAAAAAATGCGTTTTCTGTTTATAAAAGCAACATATTTGTAATCATTAAAGGTTCTTGGGTCAATCATGTGAGTGTAATAAATACTTTAATGAAAAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636901.1 lncRNA upstream 3963 17430020 ~ 17447803 (+) True LOC120546618
XR_005636900.1 lncRNA upstream 3963 17442429 ~ 17447803 (+) False LOC120546618
TU250565 lncRNA upstream 4450 17441141 ~ 17447316 (+) False LOC120546618
TU250569 lncRNA upstream 11166 17438689 ~ 17440600 (+) True G185015
TU250579 lncRNA upstream 54718 17393534 ~ 17397048 (+) True G185022
TU250659 lncRNA downstream 15490 17468552 ~ 17469575 (+) True G185067
TU250700 lncRNA downstream 82792 17535854 ~ 17548289 (+) True G185103
TU250704 lncRNA downstream 97496 17550558 ~ 17551105 (+) True G185107
TU250710 lncRNA downstream 100380 17553442 ~ 17553909 (+) True G185112
TU250737 lncRNA downstream 180057 17633119 ~ 17667720 (+) True G185134
XM_039781679.1 mRNA upstream 21764 17407774 ~ 17430002 (+) False LOC120546616
XM_039781678.1 mRNA upstream 21764 17415923 ~ 17430002 (+) True LOC120546616
XM_039781013.1 mRNA upstream 60047 17378182 ~ 17391719 (+) False mtfr2
XM_039781169.1 mRNA downstream 27136 17480198 ~ 17485596 (+) False hbs1l
XM_039781168.1 mRNA downstream 27150 17480212 ~ 17504874 (+) True hbs1l
XM_039781170.1 mRNA downstream 53892 17506954 ~ 17515583 (+) True aldh8a1
XM_039781637.1 mRNA downstream 107791 17560853 ~ 17596054 (+) True sgk1
XM_039781639.1 mRNA downstream 134728 17587790 ~ 17596054 (+) False sgk1
TU250558 other upstream 85789 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 85789 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 156065 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 618452 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 675165 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 216110 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 229496 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 463791 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 567901 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 567901 18020963 ~ 18052071 (+) False fndc4a

Expression Profile