RNA id: TU250704


Basic Information

Item Value
RNA id TU250704
length 548
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G185107
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17550558 ~ 17551105 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCACAGTGCAGATAAATTCAGTCAACTAGACATGCTGTATactgttatatacagtataacagtaTGTACTGCATCTTTACAAAAGCACTTGATGATGTCTCGTGTCACACCTACGGTACATACTTCACATACTATTCCTTTCAGGTCATGTGAACAGCTTTCACATGACACAGTTTCTTCAAATGATCCTTAACAATACATACTGATGCAGGCATTTCAATCATAAAAAACATGCATAAATATTCAACtaaaacttaaagtgatggttcggagtaatttaccctagggtcctttgcaccatgacctcgagccaaacacccccccagaagcttttttcacctgggtctaacattgggcgagttagcgtagagtagcgttagccgctgaatagcttagcgcggggctaatggacccacgtttgtatctcttaaatgaccccactaataatgcccgaaatgataccaaaggtctacactagtatatataggttatgcactcataaaacgatggattggaaagtttgtaagtacaccagaagtttatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250700 lncRNA upstream 2269 17535854 ~ 17548289 (+) True G185103
TU250659 lncRNA upstream 80983 17468552 ~ 17469575 (+) True G185067
TU250641 lncRNA upstream 97496 17451766 ~ 17453062 (+) False LOC120546214
TU250710 lncRNA downstream 2337 17553442 ~ 17553909 (+) True G185112
TU250737 lncRNA downstream 82014 17633119 ~ 17667720 (+) True G185134
XR_005636848.1 lncRNA downstream 85847 17636952 ~ 17654361 (+) True LOC120546270
TU250739 lncRNA downstream 89856 17640961 ~ 17661813 (+) True G185136
XR_005637003.1 lncRNA downstream 118061 17669166 ~ 17671477 (+) True LOC120546942
XM_039781170.1 mRNA upstream 34975 17506954 ~ 17515583 (+) True aldh8a1
XM_039781168.1 mRNA upstream 45684 17480212 ~ 17504874 (+) True hbs1l
XM_039781169.1 mRNA upstream 64962 17480198 ~ 17485596 (+) False hbs1l
XM_039781679.1 mRNA upstream 120556 17407774 ~ 17430002 (+) False LOC120546616
XM_039781637.1 mRNA downstream 9748 17560853 ~ 17596054 (+) True sgk1
XM_039781639.1 mRNA downstream 36685 17587790 ~ 17596054 (+) False sgk1
XM_039781640.1 mRNA downstream 38474 17589579 ~ 17596054 (+) False sgk1
XM_039781638.1 mRNA downstream 40341 17591446 ~ 17596054 (+) False sgk1
XM_039782079.1 mRNA downstream 64224 17615329 ~ 17623112 (+) True slc2a12
TU250558 other upstream 184581 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 184581 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 254857 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 717244 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 773957 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 118067 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 131453 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 365748 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 469858 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 469858 18020963 ~ 18052071 (+) False fndc4a

Expression Profile