RNA id: TU250737


Basic Information

Item Value
RNA id TU250737
length 473
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G185134
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17633119 ~ 17667720 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggagTGTGACAGGATGCTGTCCCAGACATGCTAGTGGCACTGCAGTTTACCACAAAGCAGATGAGACCAAATGGTATGAATCCTAAAAGATATGAGGGATAGACACATACCTAATATCAATGCCAGCATTCATGTTAAGTGTGTAGTCACGGTCATCAAATTAAACAAACATTGTTCTTGTGTTATTCCACTGCCAAACTAGTTTAAAGGACAGGGTGTCcgttattttctctttttgtcttaTTGCCTTCAAAtcaaataataagaaaaaaaacaacaatgaaaacaacTTTGTACATTCTGACTTCCCTACCCTGTCTGTGCCACTCAGCCCTGAGCCCATTCTTTTTTACAGAGT

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250710 lncRNA upstream 79210 17553442 ~ 17553909 (+) True G185112
TU250704 lncRNA upstream 82014 17550558 ~ 17551105 (+) True G185107
TU250700 lncRNA upstream 84830 17535854 ~ 17548289 (+) True G185103
TU250659 lncRNA upstream 163544 17468552 ~ 17469575 (+) True G185067
TU250648 lncRNA upstream 180057 17451766 ~ 17453062 (+) False LOC120546214
XR_005637003.1 lncRNA downstream 1446 17669166 ~ 17671477 (+) True LOC120546942
TU250765 lncRNA downstream 9005 17676725 ~ 17693634 (+) False LOC120546940
TU250756 lncRNA downstream 12745 17680465 ~ 17686398 (+) False G185145
XR_005637002.1 lncRNA downstream 18976 17686696 ~ 17687464 (+) False LOC120546941
TU250762 lncRNA downstream 19222 17686942 ~ 17688280 (+) True LOC120546941
XM_039782079.1 mRNA upstream 10007 17615329 ~ 17623112 (+) True slc2a12
XM_039782080.1 mRNA upstream 10007 17615342 ~ 17623112 (+) False slc2a12
XM_039782082.1 mRNA upstream 11519 17615334 ~ 17621600 (+) False slc2a12
XM_039782083.1 mRNA upstream 13238 17615334 ~ 17619881 (+) False slc2a12
XM_039781637.1 mRNA upstream 37065 17560853 ~ 17596054 (+) True sgk1
XM_039781339.1 mRNA downstream 3793 17671513 ~ 17686499 (+) True LOC120546414
XM_039782210.1 mRNA downstream 6673 17674393 ~ 17677036 (+) True LOC120546940
XM_039782456.1 mRNA downstream 42079 17709799 ~ 17758414 (+) False eya4
XM_039782454.1 mRNA downstream 42079 17709799 ~ 17758414 (+) False eya4
XM_039782457.1 mRNA downstream 42079 17709799 ~ 17758414 (+) False eya4
TU250558 other upstream 267142 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 267142 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 337418 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 799805 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 856518 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 1452 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 14838 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 249133 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 353243 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 353243 18020963 ~ 18052071 (+) False fndc4a

Expression Profile