RNA id: TU250755


Basic Information

Item Value
RNA id TU250755
length 980
RNA type TUCP
GC content 0.50
exon number 4
gene id G185145
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17669172 ~ 17686398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAAGATCGCTTTGAAGAGGCATCTGTCAAATGTTCAGGTAATGTGAAGTTGTCTGAGGGGCCCAGTCAATGTGCTGGAAGAGTGGAGTTCTACGACAATGGCCAGTGGGGGAATGTGTGTGGTGAATCCTGGGATGTGAATGATGCAAATGTGGTGTGCAGACAGCTGGACTGCGGGAGGGCTCATAAAATTACCACTGTGGCTGAGTATGGCCATGGTACGGGACACACCTGGATTGAACAAATTGAATGCAATGGAATGGAGTCAACACTGAGTCAGTGCTCACAGAGACCAtttagagacaaaaaatgcaactCAACCTCAGTTGCTGGTGTTCTCTGCACAGGAAGTTTGGAGGTCCGGTTGGTTAATGGTAAAGATGAATGCTCTGGCAGAGTAGAGGTCCGTCATGGCAATGTGTGGCAAACAGTTTGTGACACAGACTGGACCCGGAGTAAAGCTGAGGTGGTGTGTGAGCAGCTGGAATGTGGAAATGCATTGAGCGCTCCTGGCGCTGCCCATTTTGGCCAAGGCAGTGGATCAGTAGTGGAGGCTAGCAATTCATGTTTTGACAATGTGACATCTCTTCAGCAATGCTCACTCAAAGGTTTCAGAGGAGCAAGGTGTGGGCACGAACATGATGCTTCTGCTCTATGTGCAGCACAGATACGGGCAGTCGGCGGCTCAGGTCAATGCTCTGGTAGAGTGGAGATCTTCTATAAAGGCCAGTGGGGAACTGTGTGTGATGATGAGTGGGGAATGAGCAATGCTGATGTGGTATGTAGACAGCTTGGCTGTGGTCATGCCGTTTCTGCTCCTATGAGTGCCCACTTCGGTAGAGGCACTGGCCCAATATGGCTGGATAATGTGGATTGTAGAGGCGAAGAGTCTGCTCTCACACATTGTACGCATCCAGGTTTTGGAGTAAATAACTGCGGGCACGGTGAAGATGCTGGTGTTATCTGTTTAGGTAAGAGGC

Function

GO:

id name namespace
GO:0005507 copper ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637003.1 lncRNA upstream 11081 17669166 ~ 17671477 (+) True LOC120546942
TU250737 lncRNA upstream 14838 17633119 ~ 17667720 (+) True G185134
TU250739 lncRNA upstream 20745 17640961 ~ 17661813 (+) True G185136
XR_005636848.1 lncRNA upstream 28197 17636952 ~ 17654361 (+) True LOC120546270
TU250710 lncRNA upstream 128649 17553442 ~ 17553909 (+) True G185112
XR_005637002.1 lncRNA downstream 298 17686696 ~ 17687464 (+) False LOC120546941
TU250762 lncRNA downstream 544 17686942 ~ 17688280 (+) True LOC120546941
TU250773 lncRNA downstream 74278 17760676 ~ 17763736 (+) False G185155
TU250774 lncRNA downstream 74278 17760676 ~ 17763736 (+) True G185155
TU250775 lncRNA downstream 74278 17760676 ~ 17763736 (+) False G185155
XM_039782210.1 mRNA upstream 5522 17674393 ~ 17677036 (+) True LOC120546940
XM_039781107.1 mRNA upstream 28197 17652502 ~ 17654361 (+) True tcf21
XM_039782079.1 mRNA upstream 59446 17615329 ~ 17623112 (+) True slc2a12
XM_039782456.1 mRNA downstream 23401 17709799 ~ 17758414 (+) False eya4
XM_039782454.1 mRNA downstream 23401 17709799 ~ 17758414 (+) False eya4
XM_039782457.1 mRNA downstream 23401 17709799 ~ 17758414 (+) False eya4
XM_039782460.1 mRNA downstream 23401 17709799 ~ 17753028 (+) False eya4
XM_039782458.1 mRNA downstream 41801 17728199 ~ 17758414 (+) True eya4
TU250758 other upstream 9672 17669172 ~ 17672886 (+) False G185145
TU250558 other upstream 316581 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 316581 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 386857 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 849244 16825694 ~ 16833314 (+) True G184859
TU250889 other downstream 230455 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 334565 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 334565 18020963 ~ 18052071 (+) False fndc4a
unassigned_transcript_1081 other downstream 1245918 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1517756 19204154 ~ 19208096 (+) False LOC120546624

Expression Profile