RNA id: XM_039782210.1


Basic Information

Item Value
RNA id XM_039782210.1
length 1837
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120546940
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17674393 ~ 17693634 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGATGACGAGTGGGACATATCAAAGATGCTGAGGTGGTGTGCAGAGCCATGGACTGTGGAACAGCTAAGACAGCCAAATCCAGTTCCTTCTTTGGTCAAGGCCAAGGAGCCATCTGGCTGGATGATGTAGGCTGTATCGGTAATGAGACGTCTCTTATGCACTGCCGACATTCCACCCTCGGAGAACATAACTGTGGTCATCGGGAAGATGCCGGTGTTGTGTGCTCAGCTAACATTAGACTGATGAATGGGACTGACCAGTGCTCAGGCAGGGTGGAGTTATACCATGGTGGCCAATGGTCAGCAGCATATAATCTTAACTGGGGAATGAATGAAACTGCAGTGGTGTGCAGAGAGATGAATTGTGGAGATCCTGTTAAGTTCTCAGGATCATATGGTCAGGGCAGACATTCAAGAGGGTATACGATCAGCTGTAGCGGTAGAGAGAGCTCTCTCACACTGTGCACACTGAGAGAATATGTCAGGACCGGGCAAGATCGCTTTGAAGAGGCATCTGTCAAATGTTCAGGTAATGTGAAGTTGTCTGATGGGCCCAGTCAATGTGCTGGAAGAGTGGAGTTCTACAACAATGGCCAGTGGGGGAATGTGTGTGGTGAATCCTGGGATGTGAATGATGCAAATGTGGTGTGCAGACAGCTGGACTGCGGGAGGACTCATAAAATTACCACTATGGCTGAGTATGGCCATGGTACGGGACACACCTGGATTGATCAAATTGAATGCAATGGAATGGAGTCAACACTGAGTCAGTGCCCACAGAGAccatttagagacaaaacttgcAACACAAGCTCAGTTGCTGGTGTTGTCTGCACAGGTAAGAAAAAGCATACAAAAATGACAAGATAATACAGTCTTGTTTGTTGTTCACTTGTATCGCTCCCATAACTATGTCAATttcatgtatgtttttttttcgctTAGTTTTACAAAACTTGTTTCTATATATTGCCACTTTcaatctcattcccacatggcTTGACAGAAAAGGTCACACTTACTTGGTGTTTCAACCACATTTTCTGGTCTTCCTCCGCAGAATCATCAGTCATGAAAATGCTTTAGTCGTTATTAAATACCTACGTATGGAATTTTAGTCATGTGATAATAGGGGCTTGTAAATGCTGGGGGGGCGTAACTCCTGCCACTGGTCAAAGATCAAGAATGACCTTTCAAGATGAACACAGTTTTTTCATTGCTCTCAGTGTGACATTCAGTGACCCGATGAACTTCATGACTACATTTTAAATCCCTCaatccattatgaaaaaaagcaaagaaaaaaaatggtctCACTCTGCCTATTAAGGCTGTATTAAATCTATGGTTGAATTAATTAATATAACTGATAAAGCATAGCCCTGGTCGGCCTATGATGTAAAGCCATTGaacacctctttttttcttcgtcACGTTTGGAAATCTATCGAAAACGTTAACAGACAATGTGAGTCTAatgatggaaagccaaaaaataaaagggaaagGTGGTTCTGAGATGGTCAGACTctaaaggaaaaaaagggatCGTGTTGCTGTGCCCAATTAAGTCCTGCATCAAATATAAAATCCTCCTTCTCACCTACAAATCACTCCATGCTCTGGCCCCACAGTACCTCTCCAACCTGCTCCATCCATACACCCTATTCGAAACCTGCGGTCCTCAGACActggcctgctctccattccccacaccagactGTGCCTTCGGAGACAGAGCCAAACTCCTGAAACAACACCTGTTTACCACAGCCTACTACAACCTCCCTTAGTACAGCCactgtaattctgtaaagtgtacttgggtttcatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637003.1 lncRNA upstream 2916 17669166 ~ 17671477 (+) True LOC120546942
TU250737 lncRNA upstream 6673 17633119 ~ 17667720 (+) True G185134
TU250739 lncRNA upstream 12580 17640961 ~ 17661813 (+) True G185136
XR_005636848.1 lncRNA upstream 20032 17636952 ~ 17654361 (+) True LOC120546270
TU250710 lncRNA upstream 120484 17553442 ~ 17553909 (+) True G185112
TU250756 lncRNA downstream 3429 17680465 ~ 17686398 (+) False G185145
XR_005637002.1 lncRNA downstream 9660 17686696 ~ 17687464 (+) False LOC120546941
TU250762 lncRNA downstream 9906 17686942 ~ 17688280 (+) True LOC120546941
TU250773 lncRNA downstream 83640 17760676 ~ 17763736 (+) False G185155
TU250774 lncRNA downstream 83640 17760676 ~ 17763736 (+) True G185155
XM_039781107.1 mRNA upstream 20032 17652502 ~ 17654361 (+) True tcf21
XM_039782079.1 mRNA upstream 51281 17615329 ~ 17623112 (+) True slc2a12
XM_039782456.1 mRNA downstream 32763 17709799 ~ 17758414 (+) False eya4
XM_039782454.1 mRNA downstream 32763 17709799 ~ 17758414 (+) False eya4
XM_039782457.1 mRNA downstream 32763 17709799 ~ 17758414 (+) False eya4
XM_039782460.1 mRNA downstream 32763 17709799 ~ 17753028 (+) False eya4
XM_039782458.1 mRNA downstream 51163 17728199 ~ 17758414 (+) True eya4
TU250758 other upstream 1507 17669172 ~ 17672886 (+) False G185145
TU250558 other upstream 308416 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 308416 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 378692 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 841079 16825694 ~ 16833314 (+) True G184859
TU250755 other downstream 5522 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 239817 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 343927 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 343927 18020963 ~ 18052071 (+) False fndc4a
unassigned_transcript_1081 other downstream 1255280 18932316 ~ 18932387 (+) True trnae-cuc_27

Expression Profile