RNA id: TU250776


Basic Information

Item Value
RNA id TU250776
length 2649
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G185155
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17760676 ~ 17763736 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTTTAGTGGCACTTTTTATTGCTGATGTTTACCAccatttactgtacagacaaCACATTTTAAGTTTTGTGAGCAAGCAGAGTACAGCAACACATCTTAACAGACATTTTATAGTGACTGCCAGTTTGATTAGTTGACTTGCTTGTTTTCAGTAAAATAtccaaagaggaaaaaaaacattcagacaACTGCTCCATTTCcactttttattgacattttatttcttgCTTTTGAAGTATTCCTCGATCACATCCTTTGCCTGAGACTCCTTGCCATAGTCCTGTAGacagaaatagtttgacatgaGCAGGTTAGAGACTTCACAAAGCTCTAAATTACAGCCCAAGCAAGATTACTGGCCAATTAAGCAGTGTCAGTGTTATGTTAACCAAAACAAAATAGGACATGTCagctagtgatggtcaaatgaagctttgcgaaccactttactttctgagctcactagatggtgctctgttcaaagaaaaaaaaggttaaaggaatggcaattcagtgtattTTCAACCTTTTGTTGAACAGatagcgccatctagtgagctcagaaaataaagtatTTCACTAAGCTTAATTTGACCATCACTAATGTcagcacacacagaaataaaccAACCCAAAATACCATTTTAATACCGGGCCAATAAAAATCATGGAAATATTCTTTTGTGCATCATCTTACACCTTTTTCCAAAATTCCAACTCTTTGGgaacaaaacataaaattgaaacaaatatagCCAGACAGAGGAGTTTGAAAGATTACAGTAATGACCCATCAATCATGGTGCTTTCTGTCATGTGTTACTATTTGTAGCCATTCTTAGGGACCCCAGACATCACAGGTAGACGACGGGGCTCGTACCCTGGCTGTCATCTAGCCAAGAATTATCTACAACAGTTGCATGGCACGAGGCACAGCAACTGCACTTGACTGGCAGATCTAGTCTCAACAGCAATGCGTTTCATCAAAATATTATTGAAGGCATCTTCGAAAACCTTGCAAAAGATGATTTACCTTGACAACGACACAGCTGCAGCCCACAACCTTGCGGGGTTTGCCCTCACGGTCGATCTTGCACAGACCGACCCACTCGCCGAGCTTCTTGTTGTCATCAACCTTATCAGGTTGATCTGATGCTCAGCACAGAGGGCCTCCACCAGCTTGACGTAGGTGGGCTCATCACAGTTGCCTGCAAGGGCGCAGAGATGGGCTTGACGCCTGCAAAAGAACACCGAATTAACTCGCAGTAAGGGCTCATTCAACATTTTGGGCATTTCAAAATTTGACGGCACATCTCAGACAGAAATTGGGTAACAATGGCAGGCTTCCACATAAGAGTTCAGTAGAGGGAGCCACAATATCATCAGCGATACACCTCCTAAAGGACAAATCAAAATATTGATGAggtaaaaattaaaaacatactTGTCCAGGGCCTTAGCAGCCTCACGGATACCACGGGCGAGGCCATCGTGGATGAGAGCGGTCTTAAGCACTTCAGGGAGAGCAGTGTTGACATCCATCACACCTCCAGCAGCGACGCTATCAAAAACAGGCTTGCAAGTTTTTATGAAGTTTTACCAAAATGGGCATGACAAGTTAGTGGATTACAGTAGAGCTTCCAGGATGTCAGACTGAGGATCTCACTCATTGTTGAGTGAAGGGGTATCCGACAAAAGAAAGTAAAGTCATCACACACCAGAGAGCTCTGTTAAACAGATTGCATGCCTCAGAACAGCTAACCTTTCAAGATCAGTGGGATGTCAAATCTAGCATCAGGTTAAGGAAGATGTtaagttcattcattcatttaaactgCGTGCATTATCAAATTAGTGAATTGGTTTCTCAATTTGCTTGTGTTGTGTTTAGCACACAGCACATAAACTGACATCTGTCCAACTGGTGTGACATTTAACATTTACCTTAATTAATCAAAATTGCATGTGCTATTACACAATAGTGCTTTGAGCTCTTTCAGCTAAAACGTTAGTACTTCTAAATTCAGGCTAACAGTCACAGCTTCAAAGTGGGAACCAGTTTTGCTACGTTTCATAGAACATTATTGCAGCCACTGACTTTGTTCtagtttaaattataaaaagcaAGATCAGACACTCAACTTTCTTATGAGTTTGAAATACGTCCCTACACTTGATAACTGCGTATGTAGCTAGCACAGTATTTAAGTGTCCCCTTGCCCGGTTTTACGTTACATGCAACTCTGCTAACAttaagctagcgttagctcatGCAAAAGAACAGTCTACACCTAACGTTAGTCGCCGAACCAGTCATTGTACGAAACAGATACCCATAATAATCtaaaattacaacactgccATCACCACTTTTCACAAGAAATCAGCTCCCATGTGTTTGTTAGATATTCCGATTTTCACTGTGTGGGCTAGCAGCAAATAAAAGCGTCATGCTCACCCTTCCTCGGCCATTGTTGATTAAAGATGGATGGTAGGCTTAAAAGTTCtgcaataaagaacatatatgaAAGAAGAGTAAATATACATCGCAAATAGCTCATAGTGATGAATGTATGTATTAAGATGTTTGAATAATCCTTTGGATTGTGCCTATAGCCGGAGAAACGTACCCTATCCTACTCTCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250765 lncRNA upstream 67042 17676725 ~ 17693634 (+) False LOC120546940
TU250762 lncRNA upstream 72396 17686942 ~ 17688280 (+) True LOC120546941
XR_005637002.1 lncRNA upstream 73212 17686696 ~ 17687464 (+) False LOC120546941
TU250756 lncRNA upstream 74278 17680465 ~ 17686398 (+) False G185145
XR_005637003.1 lncRNA upstream 89199 17669166 ~ 17671477 (+) True LOC120546942
TU250777 lncRNA downstream 233 17763969 ~ 17764792 (+) True G185156
TU250930 lncRNA downstream 293675 18057411 ~ 18059367 (+) True G185254
TU250934 lncRNA downstream 339289 18103025 ~ 18104904 (+) True G185258
TU250935 lncRNA downstream 339289 18103025 ~ 18104517 (+) False G185258
TU250941 lncRNA downstream 375157 18138893 ~ 18140219 (+) False znf513a
XM_039782454.1 mRNA upstream 2262 17709799 ~ 17758414 (+) False eya4
XM_039782788.1 mRNA downstream 28117 17791853 ~ 17799948 (+) True lca5
XM_039782779.1 mRNA downstream 28117 17791853 ~ 17799948 (+) False lca5
XM_039782777.1 mRNA downstream 28117 17791853 ~ 17799948 (+) False lca5
XM_039782780.1 mRNA downstream 28117 17791853 ~ 17799948 (+) False lca5
XM_039782783.1 mRNA downstream 28117 17791853 ~ 17799948 (+) False lca5
TU250755 other upstream 74278 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 87790 17669172 ~ 17672886 (+) False G185145
TU250558 other upstream 394699 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 394699 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 464975 17293654 ~ 17295701 (+) True G184996
TU250889 other downstream 153117 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 257227 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 257227 18020963 ~ 18052071 (+) False fndc4a
unassigned_transcript_1081 other downstream 1168580 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1440418 19204154 ~ 19208096 (+) False LOC120546624

Expression Profile