RNA id: TU250941


Basic Information

Item Value
RNA id TU250941
length 1300
lncRNA type sense_over
GC content 0.35
exon number 2
gene id znf513a
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18127131 ~ 18140260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCTCTTCAGAGTTTGTCTTCTACTCTGTATTTCTGTCAAGACAAATGGACTTTATCTACTGTGGAAGTCCTTACTGTCTTATTCTGTATGTTAACACCACACTCGGCTAATTCAAATTTTCCCTCTCCTATTACAACACATATCTGGTTCTTCATtccaggacagagaacactaccAAATACTCCAATACATGTGCACATTTTTTGGCTGAACTGTTGAGCTGCACTGTGTagttttttcaattttattttgtattacaagtttaggtcaaacctttttgttttgtgcCAAATATCTAATGAAACAACTTGAATGTTACTGATAGATGATCATTCACCTGATTTAACTTTGCTTTGCTTCATGAGGATATTTTGACTGCacagtgcagctttaagtaaAGATGGGTCCTTGTAAGTGGGGCCCAAGCTCTGGTAATGGCATGGCTTCAGAATAATGTACTAATGTATGTACTAGCAAGGTGCTATTTAATAATACTGGACTTGTTTCACCCTTGATAAACTATATTGATTAATTAGGTTGcgttaactaaaaaaaaaaaaaaatctcccatGTCTTAGACTGCATTGTCATCTTTGCAGAACCCCTCAGGATTatgaaatgtgatttaaaaaaacaaacacttaacTTGCATGCACATTTTGAAAGGCCCCCTTTAGTCTTCACTTGGTTGTATGGTTAAAGAAAAAGCACAATCATACACACCGTTGCATTGAACATGTTTGCGACTAAGTTGTGGAGGGGAAATAAGCATTGGTTGACATGTATTTGATTCAGGAGTAACAAATTGTAAACGAGCTTGttcaaaagattatttttttttaaccccacAAACTTGTTCTTGCTACATATCATTAATCTTTTAATTTCTAATAATTTGGATCATGTTCCTTGTGATTACGGTTTACTATCGACTGTGAAATTAGCCCATTCTCGTGTTTTTTTACTTGAAAAAGATGACTATTAATAAGCATGCAAGTGTGTAATAgtggttttatttttctaatgTGGCTGTAATACACTGCTAGAAGTGCAtactttaatatatataattgtgtttttattattttgaatgtGTGATGTGTCATTTAGTTCCCATGGGAAAAATATTAGGGACTGTGATTTAAGTTTACGCTCTTTTTGAATTACTATAATATGCAAGGGAGATATTTTTCAGGTTGCCAACTTGCTGTGACACAGTGGAACATTGATTAGTACTGGCATCCCCCAAGTGTCCGTTTTTGTCTTCATGCAGTGTCTCATAAATGCCTTAAGTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250934 lncRNA upstream 33989 18103025 ~ 18104904 (+) True G185258
TU250935 lncRNA upstream 34376 18103025 ~ 18104517 (+) False G185258
TU250930 lncRNA upstream 79526 18057411 ~ 18059367 (+) True G185254
TU250777 lncRNA upstream 374101 17763969 ~ 17764792 (+) True G185156
TU250774 lncRNA upstream 375157 17760676 ~ 17763736 (+) True G185155
TU250952 lncRNA downstream 15751 18155970 ~ 18158108 (+) False LOC120546825
TU250953 lncRNA downstream 15751 18155970 ~ 18164654 (+) True LOC120546825
XR_005636952.1 lncRNA downstream 15904 18156123 ~ 18158441 (+) False LOC120546825
TU251013 lncRNA downstream 40913 18181132 ~ 18181983 (+) True G185323
TU251049 lncRNA downstream 157644 18297863 ~ 18298151 (+) True G185353
XM_039782306.1 mRNA upstream 89464 18020963 ~ 18049429 (+) False fndc4a
XM_039782305.1 mRNA upstream 95229 18020956 ~ 18043664 (+) False fndc4a
XM_039782801.1 mRNA upstream 126942 18002070 ~ 18011951 (+) True blk
XM_039781950.1 mRNA upstream 144895 17976113 ~ 17993998 (+) False LOC120546768
XM_039782044.1 mRNA downstream 32950 18173169 ~ 18177104 (+) True atraid
XM_039781474.1 mRNA downstream 54264 18194483 ~ 18198503 (+) True nme6
XM_039781472.1 mRNA downstream 133610 18273829 ~ 18282702 (+) True si:ch211-142k18.1
XM_039781473.1 mRNA downstream 140047 18280266 ~ 18282702 (+) False si:ch211-142k18.1
XM_039781471.1 mRNA downstream 143681 18283900 ~ 18293835 (+) True chrna2b
XR_005637008.1 other upstream 83967 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 86822 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 221645 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 452495 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 466007 17669172 ~ 17672886 (+) False G185145
unassigned_transcript_1081 other downstream 792097 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1063935 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 1289376 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 1289376 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 1289377 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile