RNA id: XR_005636952.1


Basic Information

Item Value
RNA id XR_005636952.1
length 1577
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC120546825
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18155970 ~ 18164654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaactgagagagagacacagaaaaacagagaaacagagaaagagagttaGGAACAAGTGCAGCGCCAGTTAAGTCCCAAGGACATTTGGATAATGACGGCAACAACAAACAATGAGGGATGGGAGAACTCCATTTGCACAGGTCCCAGCAGGGTAAAATGTTTTGGATTCCCCCAAGTTCACCCGGCAGCATATCAGCCTGGAACGGATTTGGCGGGAGGACGAGTGGGGGAGCAATTGGCAGGTGGAAGACGAGAGAAGAGAACCTTTGGGACTGAGGGGGGATTTGACCTGACAGGGCTGTGATGAAATGGAAAAAAGGGATAAACTGGAAAACTGAAATCTCTTGATGTGGAAAGCTGTATGCATGTGCCACTGTGGAATTCCTTGTAAATGCACATGCAAATATTCTACTATGATTTGCATTCACACAGTTACTTATGAGTAAAAATGAGTACAAACAAATATATCAACATCGTATGATAAAGTAATGGAGCACAGAATTCTAACTTCAAAACAATACCTTGAAAAATACCATGGGGATAATATATGGGCTAGCTTGTATCCTTTGCCTTCCCTTGTTGATTTGCCTCACCAAGGAAGCTCTGCGCTTGTCATCTTTGCTGAGCTAACACCATAACAAAACCCGCAGATTTTAATATTCAACCAGAGCAAATAAGACGAGTGAAGACAGCACTGAAATTGAGCGGGAGGAGGCAGGTTTTTTAGATATGTAATCGAAAATACTATATTTTTGACACCACAAGTCTGCTGAAATAGTCTTTCTGGAAAAATTACATCCTCAATCAGTTAGCCTGTGAATGCAAGACCACAACAAATACATTGTCAACCTGAAAACACTGCACACAGCCTGTTGTGAAAGCTCACACCACTTGAAACACTGCACAACCGTTTAATGAACCagccaacaaacacacagagcctGGCTCTCACTGAGCTTCTAGCAGCTAATAAATAAACTAGGCATTCTAGCCAGAGATACAGTAGGAACTCCAATACAAGAGACAACTCTCAGGGGGCGATGCAGTCCTTTTTAATTAAACTACAGTAGATCCCCAAAAAGTAACCCCTGCCAGAGCTTTACTGTTTCTTGTGGAGAAtttagagagaaagaaaactAACATTAAATGCGTGTAATTGCAGCACGTAATTTACCCAGAAAGGTATTCTTCAGTGCAACATTATCGATTGATGATTAATGTGTGTCTattttagtgtgtgtatgtggatttctttttttttttagaactctggaaagtgtctttgagtgttGTAAAAAGCGCTATATagataaaatgcattattattattattattattattattaacataaaaaaatgttataGCTAATAATTCCAACTCCTAGTTCcttttgtttctctgtttgtaaaaataatttgtccTCTAAGTTTGATTTGTGTGTGCCTAGCTGGCCCGAGGAAGTAGATTATATTGACTTTATTTTATCAAAGCGCTCTGTGTCCAGCACATTCAGTTTGCTTCAATAAACAAGACTGGTTACCTGATGGTTTCCAGTTGTAGTGTGTCAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250941 lncRNA upstream 15904 18138893 ~ 18140219 (+) False znf513a
TU250934 lncRNA upstream 51219 18103025 ~ 18104904 (+) True G185258
TU250935 lncRNA upstream 51606 18103025 ~ 18104517 (+) False G185258
TU250930 lncRNA upstream 96756 18057411 ~ 18059367 (+) True G185254
TU250777 lncRNA upstream 391331 17763969 ~ 17764792 (+) True G185156
TU251013 lncRNA downstream 22691 18181132 ~ 18181983 (+) True G185323
TU251049 lncRNA downstream 139422 18297863 ~ 18298151 (+) True G185353
TU251050 lncRNA downstream 140872 18299313 ~ 18300098 (+) True G185354
TU251052 lncRNA downstream 143739 18302180 ~ 18302519 (+) True G185356
TU251053 lncRNA downstream 144257 18302698 ~ 18302965 (+) True G185357
XM_039782036.1 mRNA upstream 15863 18127131 ~ 18140260 (+) True znf513a
XM_039782037.1 mRNA upstream 15863 18127131 ~ 18140260 (+) False znf513a
XM_039782039.1 mRNA upstream 15863 18130689 ~ 18140260 (+) False znf513a
XM_039782306.1 mRNA upstream 106694 18020963 ~ 18049429 (+) False fndc4a
XM_039782305.1 mRNA upstream 112459 18020956 ~ 18043664 (+) False fndc4a
XM_039782044.1 mRNA downstream 14728 18173169 ~ 18177104 (+) True atraid
XM_039781474.1 mRNA downstream 36042 18194483 ~ 18198503 (+) True nme6
XM_039781472.1 mRNA downstream 115388 18273829 ~ 18282702 (+) True si:ch211-142k18.1
XM_039781473.1 mRNA downstream 121825 18280266 ~ 18282702 (+) False si:ch211-142k18.1
XM_039781471.1 mRNA downstream 125459 18283900 ~ 18293835 (+) True chrna2b
XR_005637008.1 other upstream 101197 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 104052 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 238875 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 469725 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 483237 17669172 ~ 17672886 (+) False G185145
unassigned_transcript_1081 other downstream 773875 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1045713 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 1271154 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 1271154 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 1271155 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile