RNA id: TU251128


Basic Information

Item Value
RNA id TU251128
length 1736
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G185415
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18643419 ~ 18645154 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGATTTACCAAATTCCTGAAAATCTCCTAAATGAAAATTCCTAAATATTCAAACTTtacactgggggaaaaaaaaagttgtgttcATTATGATGGTTTTGACTCATAAATTATGACATCAGCAAATCCTCATTTAAGATCGTATGAAGTGTTGAGTTTCCTTTACTTCTTCTTAAACTCATCTCCAGTCTCATTGTCCTTTTGATACTTCTCACTGCTGTAATATTATGGTATAGTTGTACTAATTAGAATGAGTTTTAAAGCTCTATGACTATATGTTAAGCGGCAGTCTGTGTGGAGGAGTACACATGTGGGCTGGTTAATACTGTATGTGGACATAAACAGGTCAACATGAACACTAACTGTGTTATAAAGCCCTAGTTTAAGGTGAAAATGCAAATCGCATGGACTCTCACAATCCTTTAAATTACAGCATGTACCGTGCATATGAATACACTATTCATTTTACTGTCTAGTGTTTACTAATGTAAGGACCACTTAATAACATGTCACTGGCTTTATGATAAGGTTTTTTTCTCATTCACTTCTGTTAGAAACTGGACGAAAGTAAAATAATCCGCGCCTTCCCTATCTCCCCCCTCCTTTTTTGTGATAAGTTTGTTTGagtatctgtgtgtttggtaTATTTTGTCTAAATGAGCTATGCTGTTGAGTACCGTTGTAATGTGATTCAATTTACATGTTGGGAAAGTTTAGTGAtaataattaaatgaaaaaagatacatttaagAAGAtggatacattttaaatattaacaCTCATTTATGTGGTTAATGAATCGTCTTGGGATTATTTGTATGACACATTAGtgaagcaattttttttttatctccgaTACTTTATACTACCGATACTACAATAcacatttaatatatatatgtgtgtattatataacctacaaaatattacatacacttatgttgaATTTATCTTGTAAAGCCACTGTAATCTAGACCAGTTACAAATGAGGAGATACAGCGGAGTGgacatattattataattaagcTTTGAGACTTTTAGGAAATATaaagtgcaacacacacacacacatctaacaAAAGTAAATCATGTGTCGGACTGCACGGGATCAAAATGAGACAATCATATGACCTCTCTGAAAGCTCCcaaagcagcaacaacaacaacaaaaatccatCACAAAGAAATGCGTGACAAATCTGTATGATGGAGGATATCTGCAGAATTTTGTCCGTTCAGAGCAGTAAGAATTAGAGTGTAGCATCAGTTTACCTGGAAGTCGTTGGCTTTGTTGTAGTGTATGTTGAGAGCTCTGAAAAGGTCTGATTCTCTCCCCACAGTCAGACCCCTCACGTCGGCCACTCCTTCTAGAAGAGCGGTCCGGGCAAACTTCTCCATCTGGATGTAGTAAAACTCCCTGAAGTTGCTGAACCACTTGATGAGCTGAGAGGTGATGCAGCGCGTGAACTGAGGACGAAACGGAGAGACCGGTAAGTGAGATGATCAAAGTGTGTGATTTGATAGGctatattgtaatttatttgaCTGAGAGAGAAACTGCTAAACATGTTGGTATTACAGATATAAAGcaagtaaaatacaaataaactgTATTTCACCACATCTCTGTGTTGCCATTTTTgcacatcttgttttttttttacagaaatgcaATAGTGACGTAAAGTTGTTAATCCAGATCTGATTGCTTACTTGATTTTAATGTTGTTGacgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251126 lncRNA upstream 3038 18636374 ~ 18640381 (+) True G185414
TU251127 lncRNA upstream 3038 18639092 ~ 18640381 (+) False G185414
TU251124 lncRNA upstream 8367 18626281 ~ 18635052 (+) True ylpm1
XR_005636953.1 lncRNA upstream 179391 18443952 ~ 18464028 (+) True LOC120546827
XR_005636954.1 lncRNA upstream 180811 18443952 ~ 18462608 (+) False LOC120546827
XR_005636898.1 lncRNA downstream 21486 18666640 ~ 18690033 (+) True LOC120546607
TU251198 lncRNA downstream 58811 18703965 ~ 18705234 (+) True G185471
TU251197 lncRNA downstream 60754 18705908 ~ 18711967 (+) False LOC120547227
TU251241 lncRNA downstream 173930 18819084 ~ 18821146 (+) True G185495
TU251367 lncRNA downstream 369572 19014726 ~ 19019533 (+) True G185589
XM_039781340.1 mRNA upstream 8375 18598365 ~ 18635044 (+) False ylpm1
XM_039782050.1 mRNA upstream 62296 18500991 ~ 18581123 (+) False LOC120546828
XM_039782051.1 mRNA upstream 62296 18542552 ~ 18581123 (+) True LOC120546828
XM_039781878.1 mRNA upstream 201157 18424148 ~ 18442262 (+) False flvcr2b
XM_039782584.1 mRNA downstream 3147 18648301 ~ 18654514 (+) True LOC120547135
XM_039781662.1 mRNA downstream 50501 18695655 ~ 18698104 (+) True fosab
XM_039782718.1 mRNA downstream 60702 18705856 ~ 18711994 (+) True LOC120547227
XM_039782206.1 mRNA downstream 71869 18717023 ~ 18722986 (+) True tmed10
XM_039780896.1 mRNA downstream 88174 18733328 ~ 18737691 (+) True eif2b2
XR_005637008.1 other upstream 588493 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 591348 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 726171 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 957021 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 970533 17669172 ~ 17672886 (+) False G185145
unassigned_transcript_1081 other downstream 287162 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 559000 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 784441 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 784441 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 784442 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile