RNA id: XM_039782718.1


Basic Information

Item Value
RNA id XM_039782718.1
length 1982
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120547227
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18705856 ~ 18711994 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cGGACACTATAGTTTGTCCAAGAGGGGTTGCCGTAGCTAGCTGTCAAAGATGGCgaccgttctgcacatgcgcgactcacatcttGTAGGCAACAGGCAAGTTGGGATCAAATATACATCCATGATAGCCTACATCCATTGATCAAATCgaacacaaatctaaccggtaTGAATTGTGCGGCGGTCGCCCGTGATCACTTCTACGTAGACTTTGCtcatcttgaacgagcctaACGTGACTGTTAACGGGTAACGTTACAACTGGTATGGACTCCTGTTCCGGTAATGTGTCAAATATGATTTTAGGGTCTTTGTACGCGTTATTAGCGGGCTTTTTGGGTGCTGTTGCCTCATTGTCTGCCAAACTGTCACTCGGTGCAGACTACCTGAGAGAGAAGTGTGATTCCGGGCTCAGCGGCTGGACTGAACCATGGACTGAACCTGGAACCGCCTGTGACTGGCTCCACATCCCCCTGCGGCTGCTGTGTGGAAGCCTTCTGTTCACCTGTAATGCTGTCATGTGGACCTTCTTTTCCAAGGCGCTCCGACACTGCTCCTCTTCAGCCAGGGCTACAGTCACTACCACTGCATCCAACTTCATCTCCTCAgctgTCCTGGGGACGGTGATGTTTGGAGAGAGTCATGCTGTTCTATGGTGGGTGGgaatctctctcactctgtctggACTGCTGGTGCTTCATGGATCCACACCTCAGACACTCCAACAGGAGGAGGGCAAAAAGGACAAGTGATGTAGATTTGACTCATCACAAGCATGCAGCCACTGCGCTTCAGCCACAATAACCTGTGGCTAGACTCCCTCAGAGACAATGTCTCAGGCACTTAAAAGTGTCTTAATGTAAAGTGCAGTTAAAACAGCAGACTATGTTGCACATAACTGATGGTATATTCAGTACCACCAGTCATAGTTACCAATTCATAGTCTAATGTGCGTTTATTGTTTTTTGAGGAAATTAAATGTACTTGGTGTGGTACACATGATATTGAGCAACACAATGCTTGTCTCATGCcactccccctttcataacaaaTGAACTGTTTGACGTAGACTCTTGTAGGAGACATCATTGCACTCATAAAGAGTTCCTTTCATCAGTGGTTCGCCGTGCACCATATAatatggccacgccccctttcataactcaTGAACCATTTATCATAGACACTTTTGGACACAGGATGTGGTACAACATTTGCAATGCATAATTTCCAATGCCACACAGTCCATGCAGGAAATAGTAAAGATTATTATAATGGGGTCAGCTTAAAGCAATTCATTTAAAAGTAATGTCACATTATTAACATGTTCTCAACAAAATGTTGATACTAATAGTACACCAAGTAGTGACATTGTGACAGTGAAATTGATATGGTGTTGATAATACAAAAACTACTGCAACTTAAAATTTCTAAGTACATTGTACCTGTGGGAAATTGCCAGCAGCCTGTCTGATACACTTGGAGTTGATGTCACTTTTGTACTTCACTAGACACATTTTCAGGAAACCTGTATGGGAGATGGACATTAGCTATTTTTATATAGAGTTTGGTTCATTGGTTTGAAGATGCTAACAAATATTCCATCTCCATAGTGCGAATTTTCCGTACAACTGGTTTAACTAGAATTACCTCCTCTGGGTTGTATGCCTTCGCCAATCTGTCAAGTGGAAGTTTACAGTACATCCATGTCTGTACAGacttatataatatatgtagtgGCGAGAAAGACGAGAGACCAAATTAAAGCCATCTTGAATTACCCTTCTCACCCTCTCTACAACGAGCTGTGATAGATTGGCAGCTCATTGGAGAGAGGATGAAGAACAAGATCAAAGCCTGGGAGTTGTTCCTCATCTAAGTCGAGGGTCTTATGACAAAGGATGTTGTTTGCTGTACTGTGTGGCAGATTGTGTTTTGATTTTACAATATAgggatatataaataaaatttattttacGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251198 lncRNA upstream 622 18703965 ~ 18705234 (+) True G185471
XR_005636898.1 lncRNA upstream 15823 18666640 ~ 18690033 (+) True LOC120546607
TU251128 lncRNA upstream 60702 18643419 ~ 18645154 (+) True G185415
TU251126 lncRNA upstream 65475 18636374 ~ 18640381 (+) True G185414
TU251127 lncRNA upstream 65475 18639092 ~ 18640381 (+) False G185414
TU251241 lncRNA downstream 107090 18819084 ~ 18821146 (+) True G185495
TU251367 lncRNA downstream 302732 19014726 ~ 19019533 (+) True G185589
TU251368 lncRNA downstream 310702 19022696 ~ 19023030 (+) True G185590
TU251369 lncRNA downstream 312270 19024264 ~ 19024578 (+) True G185591
TU251370 lncRNA downstream 331230 19043224 ~ 19043548 (+) True G185592
XM_039781662.1 mRNA upstream 7752 18695655 ~ 18698104 (+) True fosab
XM_039782584.1 mRNA upstream 51342 18648301 ~ 18654514 (+) True LOC120547135
XM_039781340.1 mRNA upstream 70812 18598365 ~ 18635044 (+) False ylpm1
XM_039782050.1 mRNA upstream 124733 18500991 ~ 18581123 (+) False LOC120546828
XM_039782051.1 mRNA upstream 124733 18542552 ~ 18581123 (+) True LOC120546828
XM_039782206.1 mRNA downstream 5029 18717023 ~ 18722986 (+) True tmed10
XM_039780896.1 mRNA downstream 21334 18733328 ~ 18737691 (+) True eif2b2
XM_039782905.1 mRNA downstream 42899 18754893 ~ 18760888 (+) True LOC120547336
XM_039780960.1 mRNA downstream 49423 18761417 ~ 18779102 (+) True LOC120546187
XM_039780961.1 mRNA downstream 49423 18761417 ~ 18779102 (+) False LOC120546187
XR_005637008.1 other upstream 650930 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 653785 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 788608 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 1019458 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 1032970 17669172 ~ 17672886 (+) False G185145
unassigned_transcript_1081 other downstream 220322 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 492160 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 717601 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 717601 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 717602 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile