RNA id: XM_039781692.1


Basic Information

Item Value
RNA id XM_039781692.1
length 7693
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120546624
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19204154 ~ 19237033 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCTGAGAAATTGTTGTATCCCAGCATCCAGCAATCCGCCGTGCTCTGCGTAtattctctattttttttttttttattattattttgccgTAGGAGTTCAGGTTGTCCCCCTCTTCATCTAAAGGGTACTCCGAGGCTTTGATCCTAGAGGACTGGGTTTGCGGGATATGGCCCAATAGCAGCAGCACGTGATGCCGGACCATGACAGCGACTCCCTCCTGAACAGACAGACCAAGCGAAGACGTGTGGACATTGGTGTTAAGAGGACCGTGGGCAGCACAGCCTCCTCCACAGCAGcagccacaacaacaacaaccactgaTAACATTGCCCGCGCCAAAGCAGCCATTTTCAGTGCCATGAACTCTCTGAGCTCCCACTCTCACCACGGATCAGACACCGACTCCATGGAGTGCTCTGTAGTGCAGCCACATGGTGGACCTGGCGTTGTGTCAGCCAGCGACAGTGAGTCCAAATCCAATGTCCTCCGAAAGCTACTGAAGAGGGCCAACTCATACGAGGACACCATGATGCCCTTCCCTGGCACCACCATTATCTCTCAGCTTCTCAAGAATAACATGGCTAAAAATGGAGGACCcgagaggggagaaagaggggacaGGGGTGATAGAGGGGATAGGGGAGATAGAGGGGATAGGGGAGATAGAGGGGATAGGGGAGATAGAGGGGATAGGGGTGATAGAGGGGATGTTGGCTTCCCCGGATCAGGGCTCTCCAATGCAAGTTCAGATGCTCCCCAGGAGGATGCCTGCAGTAACTCCTCCCATGATAGCACCCCTCAAGAGTGCTTGTCACCCTTTGGTCGTCCTCCTGGCCTTGCCACCTTTGACATTGAACGTCTCAACGATGAACACCTGCGTGCCAAGCGAGCCCGTGTAGAGAACATTATACGTGGTATGAGCCACTCACCCAGTGTGGTGGTACCTGCTGCTTCCCGTCATGAGCGTGAGCATGAGATGGATCGAGACCGGGAGATGGATCTAGACTGCCCACCCCCTCAGTCTCAGCAGCAGGCCCCCAGCAGCCCACGGGGAGGCGAGGTgtgcagcagtagcagcagagagaacaAGCGTAAGCAGCGTCTGcctcagcagcaacagcagagctTCACCCAGCTGGTGTGCCAGAGGAAGGAGCAAAAGCAGGAGGAGCGACGGCAACTGAAGCTGCAGCTGGAGGACATGCAGAAACAGCTACGCCAGCTGCAGGAGAAGTTCTTTCAGATTTATGACTCAACCGACGACTCGGAACACAATGACCTCCACAATGACCTCCACAATGACATAGGAAACATGTCCGAGGACAGCCCAGCCAGGTCTGACACCGGCGGTGATGACCGGGGTGGAGATGACTTGCGCTCTGACAATGAGATGTCTGACCTGGACCCGGGCCATTTCCTGGACAGGGCGCGGGCGTTGCTTCAGGAGCAGGCCATGCTGGCAGCTAGAGAGAAGCCAAGAAGAGAGGGCCTCAGCAGGAGCAAAGGACAGGGAGGTCCAGGCTCCTCAATGCATGCTGAAGGTAAACAGCTGGCGGAGACACTGAAGCAGGAACTCAATTCAGCCATGACCCAGGTGGTGGACACAGTGGTGAAGGTGTTTGCCAAGCCTCCACGCCCTACACCCCAGCAGGCCTTCCCCTCACTTTCCATACCTCCTGAAAGATTTCCCACCACTGTCAATGGAGACAACCCCAACTTCCACACCACCAACCAGAGGCTGCAGTGCTTCGGTGATGTCATCATTCCTAATCCACTTGACTCCTTCACCAGCATGCCCGGGATGCCAGGTCCCACCAATGACCAAACAGAGGCGATACCCTTAGTCGTGAGGAAGACACCCAGTgagcaccaccaccaccaccaccaccaatcCTCAGCTGTGGGTGCCCATGGCGGGCACCACCACCCCGTCCTTCACCCCTCCTCACTCTCTGCCTCCATGGGCTTCAGCCCCCCATCCTTTAGACACCCCTTTCCACTGCCTCTCATGGGCTACCCGTTCCAGAGTCCCCTTGGCGGGCCCACAGGTGGCTACCCAGGCAAGGACCGTTCCTCTCCAGACTCCATGGACCTGTCCCGGGAGACCACCAGCCTGAGGACCAAGATGGCATCAGGTCACCACATGGGGCACCACCATCGCTCTTGTTCACCAGCGCACCCTGGCAGCACAGCCGAGGGACTCTCCCTGTCCCTCATCAAGTCTGAGTGCAGTGATCTCCAGGACATGTCTGACATCTCACCCTACTCAGGCAGCAATATCCAAGAGGGTCTCTCTCCCAATCATCTGAAGAAGGCCAAGCTCATGTTTTTCTACACCCGCTACCCGAGCTCTAATATGCTCAAGATGTTCTTCTCTGATGTCAAGTTTAATCGCTGCATCACCTCCCAGCTGATCAAGTGGTTCAGCAACTTCAGGGAGTTCTACTACATCCAGATGGAGAAGTTTGCCCGCCAGGCCATCAATGATGGAGTCACTGGAGTCGAGGAGTTGGGCGTCAGCCGCGACAGCGAGCTCTTCCGAGCCCTCAACATGCACTACAACAAGGCCAATGACTTTGAGGTCCCTGAACGCTTTCTGGAGGTGGCAGAGATCACACTGAGGGAGTTCTTCAACGCCATTGTGGCCGGCAAAGACGTGGACCCGTCCTGGAAGAAGGCGATCTACAAGGTCATCTGCAAACTGGACAGCGAAGTCCCAGAGATTTTCAAGTCCCCCAACTGTCTCCAAGAGCTTCTACACGAGTAaatttctcctcctccttttcctcctcctcctcctcgctcgACGCTttgcgctttttttttttttttctctgatttcATAGAATTTCTAAATAttctcttttgttgtttttttcttttttccaaaacttttcttttgatttcctgttttttttctttgaatgtATGAAAGTTATGAAGTAGCATTCCCAATCTGAAGCCTGTGGCAGTTCCTAAATGACCTAGCTATTGTGTTGTTGTTCTTATATGATAATTATCAAGatggtttttatttgttttgtttttgtatgatTCTGAACTGAGACTCTAATCTTATTGGGTGTTTTTTGGACCGTGTGAACCCTCATCCGTTTGGCTTGTTTTATGATCAACACTAACAAAGTCCACAGTGTGTGGAAGACGTTCCTGAGTTCCCATTTACACTACTAAGAACATAGGCTGGGTTCCCTAAAGACTTTACTCATGGCACCCTGGGGTGTCCCTCCAATCCAGTGGGTGTCCAAATGAACTGTGTTCCCCGCAAAGTGGGCTCCCAATAGACTGTGCTACTGAAGATGTCCCCAACAGGacagtcacacacatgcacacaaaaacaaggCCTAGTGAGGTTACTGACTGACTGGACGAAGACTGGACTCGTGGTACTGGTCTGTACTAGTCTGTGGGACTTGGACTGGTTTCCAATAGCTACTGAGCTCTACCATGTTTTGAAGTGTGTTTTCCCTGCAAGTAGGGCATTGTGTTTATTGGGtgtacattattattttgattattattattattattgttgttgttgtttaggattattattatttgtcatCACTGCTTGCTGAAGATTGGCACTTCGAGATTTGTTTGTCCCTTGATGCtgttgcagaaaaaaataaattattgctatTAATATTATTCAAAGAGTTTAGATTCTGAAATATGTTGCCCCCCATTTCCCATCCTTCTTCTTACTCCTGTCTTGGTTTGTCCATCTCTGAAGTGGACTTTTGTggatattttgttgttgtttttttggtagTTTGGGGCAACTTGCCTGGAAAGTGTTTTGATTTGGGGTTTTAATGGAGAGCCATCGGAGTAGGCTTCTCTATATGCCTGTAGTGACTAGCCTATCCTGCAGAGGACCAGTCCGGCAACGATGCTGGAAAAAGAGTAAGGCTGCAGAAACACATGAAGTAAAAAGTGCAGAAGTATAGAAATATGCAGAAGACGTGTGGCCTTTTGGTGCGTGatctgctgtttttaaatggcTAATTTTCCGTAGCCACTCCAGCTTTGACAACTAAACTGCTCCCACTAAACGAGCCATTTGTCCAGCTATCAAATAAATCTTATTCGTCTAATTCTGTGGCGGATTGGTGAACATAGACAATAATAACTGCAtagtctttttgtctttttatagcACTGTTCACTAAATAGCTCATGTGTGAGATGAAGTCCACCTGTTTATatgacaggcttttattgtgattaGCCTGTACAAGGTGTAAATGACATTATGAAGTTATTTCAATAGCAGTTGATACTTGAATATATCAGAATACTGTGGCAATCTAAAGTACAGTGTCGCTGAAACAATAGATAATTGAATACATACGAATAGAAGcatcaggaggaggaagataaTTTAAGGAGGgcaaagagagaggggaatataAGCTGAAACACAAGCGTTTATTAATTCTGCTTCAAGTGGAacaacacacacgcgcacacactgCTCCTTCCCTCCATGTTCACCTGCCTTTGAGTGATCTAGCTCCTCTCTCAATGCAACAATACGAGGTCGGAGGTGAGCACTCACCCCAGGGGTAGATGGAGAAGCTCTCAGCACTACAAAGAGCGGGGACAAAGGCACAGAGTGAGGAGCAACACGCACCTGAAACCCTCTGCTCTGTCCCTCCGTCccaaactggcagcttttaagACCCAAAGTGTGATTCTCTTGAAGCCACTGTGCCCAGTTTGTTAAACAGCATTCCTTTCACTTTTACCTGAGATTCCAATCCCAGATTTTCCACTTGAACTGTACATGTATATCtactgttttattcattttatccGCCCTCTCAGgcttttaagacaaaaaaaataagcagTTACTGTAAGCTGCCCTTTTGATGAGGTAAGTTAAAGGAATGAGAGGCCTTGAATGCTTTCTAGAGTGCGTGCGAGCTAGCTGTTGGTCTCACCTTGGCGACATTAtctcatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacaaaaGATCAAAAGGGGCAGGTTGCTTAACCTGCTGACTTGTCTAAGCAAGACAAAGCGCCTGACAAAAGGaggcagagaaagacagagagctACTCCCTTCATTATTTCCCCCATCTCTTCCTCCCCGAACAGTGTTCTTCTTAAGATACGGGAGCCCTGAGAGAGCGAGCCGGACACATTTCTCACTGAAGGATGGGCTAGGCCCTGCGTGTCTCAGAGTCTCAAAGCACCAGCCAAAGGCTCTAAAGTGCCACAAACAAAGGAGAAAGGAAAGGACACTTTTATCTGATGCACAGATTATTATCGCTCCGCACCCTCCCCCTTCCTGCAACCCCACCCTAAAGTTAAAGAGTTCCTGCGCCTAAAAAGATTAATTCAGGATAATGAAGACTTTAAGTGCAAAAAGGATTAGCAAGACCTTAAAACCgcattgaaaatatttttgtcaaGTTTTCCTTTTCTGGGGTCGTTTGATTTTAAGGATAACATTATTGAAATACTTATATAGCCTTTTTTAAGAATTGTAAAAGATAAatatatgggaaaaaatatatacagtagtgGAAGTTCTTTGGAAGGCACTGTTAAAATTGTTTCATTTATGAAATCTTGAGGGTATTTATAGTGACAGCTTTGTTTAAATCTGTAATATGAATAAGTGAGTTGTTGGTAGATTAGGAGCAATAGTTGTAGGTTTTTTGCAGGTTTTGTGACCAGTTTTCCTTTTGGTTTCTTTACCTTTTGTATCGTGCTGAATGGCTGTGCTCTCGAGATCAGAAAATAAACTTGGAATCCGTTTTCAGAGAATGAAATGTTGTTGCTACTGTAAATACTTTCAGGATGAAACAAAGAATAACTGTACAGTTTTTCTATTCTCACTCAGAGTGCGTAGAGAAGGGTgaaagttgtttaaaaaaagaagggtgAAGAAAAGAGAGATGACCTGCTCTCTCCAACCGGACTCATAACCACTCTTCCAAAAACCCACAGAGGAGaggtttttcttgtttttttttcccctgccaTGCCTTTAACGGGAGTCTGTTTCCCGTCGGCAGTGCCCTTGAAGTTGCACCAGCATGCGTTTCTTTAATTTCCGCTGACAGAACGATGCATTAGGCTAGCGGTCGGGTAATGATGATGTCACAGAGTGGCCCGTTGGCAGGACCCGGTCTCGTCCAAAAACAAGGGCAGACTGCCGCCATCCTAGCTCTAGATTTGACccgggagagagacaggaactCATTGTCATCAGGAGACCAGTGTCATGGAGGGGGCACATCATGCTGTACAGTTTAAAAAGAGActgcagacagaaaaaaatgatttataCCCTTTTTTACCAGGTTCAAACAGTTGGGAAAAGTTTGGACTTCTGTGGAATTTATGTACGCTTtgcattctgtgtgtgtttgtgtgtgtgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagatgtatatgtgtgtgtctgtgtgagagaaaaGACCGATTATGAGAAGCTGTGAACCAGTGAGTGACACAATTCTCAACACTGTggcccctcccccacccctggGAGTTGCATCCTGACATGTAAATGATTCTCATTAAGCGttggcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcgatAATTTCCTCTGATCTGTTTTCTGACCTGTTTGAAAGGGGGTTTTGTTTCTCAATGCTTTCagtagtaatttttttttttttttttttgttatgacattgctcctctttttttttgtaaatatcaATGATGTGGACTTACAGTGATAAAATACTGCCTTTGTGTAACTTAGCAATATGTTATGTAAATAGTGTTTTGTTGATGCTTTTTGTATGACATTATTATTCGATTCTAGTGCAGTAATTCCAACTGGAACAGCCATGTTTCAAATACAGTCTGAAGGGTTACACACAAGTTGTAAAATAAAACTCTTGACATGGCTGCTTTTTTCTGTTATTGGTGTCTATTTGTCTTGCAGATTTTGTGTAATTTATTGGTTTAATTTATCCTAATttatttgatgttgttttcttttgtttttcaaacaGGGAAGGCTGTACTGCATTTCGTTATGTAGAAccaatttaaaagattttaatCCTTATCTACCTAAAATTGAATTTAAGAAATTAGTATTCTAGCGTGCTCATACAATTGAGAGAAATGATAAAATGGAGATCTTGGCAGCTAAATGGAACTGGacagttttaaagaaaaaaaggtttttatgttttgttccGGGACAGGGCCGAGGGTGGGCTAGAACGCTGAAACTAGTTTGAAGCAGTTTTGTATTTTCTCTTGAGATTTTTTCCCCTGTATTGCTTTGGCCCAGCCCAAAAACAACCAGTAGTCAAATTGCCTTTCGTGCCTTCACCCTCTATGAACTGAATGTATGTGCAGTATATATGCAAGCTTGtgcaaaatgaataaaaaatggaaataaaaatgaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K20211 PROX1; prospero homeobox 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251378 lncRNA upstream 120575 19082696 ~ 19083784 (+) True G185599
TU251371 lncRNA upstream 158252 19045414 ~ 19046107 (+) True G185593
TU251370 lncRNA upstream 160811 19043224 ~ 19043548 (+) True G185592
TU251369 lncRNA upstream 179781 19024264 ~ 19024578 (+) True G185591
TU251368 lncRNA upstream 181329 19022696 ~ 19023030 (+) True G185590
TU251440 lncRNA downstream 41074 19278107 ~ 19279357 (+) True G185656
TU251470 lncRNA downstream 117583 19354616 ~ 19427463 (+) False acbd3
TU251479 lncRNA downstream 131020 19368053 ~ 19373933 (+) False si:dkey-206f10.1
TU251505 lncRNA downstream 316241 19553274 ~ 19554235 (+) True G185696
TU251494 lncRNA downstream 335567 19572600 ~ 19576899 (+) True zgc:193593
XM_039781341.1 mRNA upstream 77700 19102583 ~ 19126659 (+) True rps6kc1
XM_039782387.1 mRNA upstream 101939 19097059 ~ 19102420 (+) True moxd1l
XM_039781706.1 mRNA upstream 127877 19070669 ~ 19076482 (+) True si:ch211-203k16.3
XM_039781705.1 mRNA upstream 127877 19070669 ~ 19076482 (+) False si:ch211-203k16.3
XM_039781180.1 mRNA upstream 201329 18990946 ~ 19003030 (+) True prkg3
XM_039781673.1 mRNA downstream 23229 19260262 ~ 19269398 (+) True smyd2b
XM_039781031.1 mRNA downstream 90974 19328007 ~ 19333616 (+) True LOC120546239
XM_039781026.1 mRNA downstream 130687 19367720 ~ 19389223 (+) False si:dkey-206f10.1
XM_039781024.1 mRNA downstream 130956 19367989 ~ 19389223 (+) False si:dkey-206f10.1
XM_039781028.1 mRNA downstream 130957 19367990 ~ 19389223 (+) False si:dkey-206f10.1
unassigned_transcript_1081 other upstream 271972 18932316 ~ 18932387 (+) True trnae-cuc_27
XR_005637008.1 other upstream 1149433 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 1152288 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 1287111 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 1517961 17682558 ~ 17686398 (+) True G185145
XR_005636888.1 other downstream 192562 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 192562 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 192563 19429596 ~ 19539208 (+) False nhsl1b
TU251521 other downstream 397250 19634283 ~ 19648156 (+) False acp1
TU251678 other downstream 619702 19856735 ~ 19860205 (+) False kif25

Expression Profile