RNA id: XM_039781027.1


Basic Information

Item Value
RNA id XM_039781027.1
length 4941
RNA type mRNA
GC content 0.49
exon number 21
gene id si:dkey-206f10.1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19367720 ~ 19389223 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTATTAATTGCCATCTCTGCTCTTAAAGTATTTGGTTGACTCGCCCAAAGGCTGAGAGCATTGCATTCGTCTTGCCGTTGTCTTGTTGCCAATGATCTGCCAGCTTTGCAGGCGAGTGAGAGGGGCTTTCTGACTTATCAATCCTCTTTGCACTCCTCACTGCAGCTCTGCTTTGTGGCAGTGCTTGATTAAATTTCAAAACAGTTGTGGTGTTGACCTACAATCCTGCCAGAACGGCACCACACATCTTGGTTGGATCTTTATCCGTTTTGGACACTTCATCCCAGTGGGGACTATTTCAAGTTTCATTTTGTCTTGCATGGGTTATGCCTTCATTTTCAGATCTGCGTACAATTCCTGTGCCATGGAAACAGCAAAAGTGGATTATGACGGGCGGGACGAGTATATCCTACGGCAAATGTTGGACATGACGAGAAGATACACAATATGTAAAACATTACAGGCTGCTGCCTCCTGATCAAAGACCAACAGATGAGGTCGGCTATCTTACCACCATGGTGACCTTCTCTGAGACAACACAGGTCTTCCCCATGGAGCTGCGTGAGCCGACCTGCCTTACCGCGACCCTGTCCCCTGGGCTGCGGCGGAAAAAGATGCTTTGGCAGAACGCTGTAAAACACATCATTAACCAGAAGGAGCTCAGCATCCAGGTGGGTGTGGAGCCAGCAAGTAAAATCTTTGTGACTGATGCCTACATGGACGAGATCAACAAACAAATCCGTGACAAGGCCTCACGGGGGGTCACAAAACGTCGCTCCTCCACATTTAAAGTGCACCCTTCCCGTGGCTCCATCAGCACATACAACAGTACCAGGGCTTCTTTTAATGAATACTCCAGCGATGCCGACTTCTTTGTGCACTGGGGCCATACAATTCGTGGAGTCTGTATACCCACCTTGAGGCATACCTTCAAGTCTCGTGATCTGGAGAAACTGTACCAGCAACACTACTCCCACCAAAGACGCAACTCTCTAGTCATCACCAATATAATCGATGCGGTGGCCAAATTACACATATTGGTTCTGTACCTGGCAGTGGTCCCTGAGGCGGTCACGGACACTCTGCGTGGCTACCTGACGGGCATTTTCATGGTGTTAGCTGTAGCGCTGTGCATCGTGGTGTTAACCTGCAAGGAGTCCTTGTCCCCACGGTGGCTTCACTATGCTAGCCTAGCTTGCTGGTTCTCGCAGACCACCCAGGTGCTGGGAGGACTGGTGTATGGACTGGAAAAAGACCCATCGTGGTATGTTTTGTTCACATTGTTCGCCACATACACGCTGCTGCCGTTACCTCTGCTGTGGGCCATGTGTGCTGGCTCCCTCACCTCAGTACTGCACCTTCTGGTGGAGATAGTGTGCCACTACAATGATGCCATGCTTTTGAGAAAGGTGTTTGCCAAAGGCCTGCTGTACCTGGGTATGAACACAGCCGGCTTGTTCATCCACTACCTGACAGACCACGCCCAGAGACAGGTCTTCCTGGAGACGCGGCGCTGCATTGAGGGTCGCCTCAAACTAGAGCAAGAAAACCAGAGACAGGAGCGTCTGGTGCTGTCGATCCTGCCTCGCTTTGTTGCCTTGGAGATGATCACTGACATGAGCTCTCTGGAAAATGAACTCAATCCTCATGAGTTCCACAAGATCTATATCCACCAGTACAAAGAtgtcagCATCCTTTTTGCAGACATCAAGGGCTTCACTCTGTTGTCCATGAATCTGTCGGCCCAGGATCTGGTTCGAATCCTCAACGAGCTCTTTGGACGCTTTGACCGACTGTCAGATGAACACCACTGCATGCGGATAAAGATACTGGGAGACTGTTACTACTGCGTGTCAGGGGTCCCTGAGCCACAGCGTGCCCATGCCCGTCATTGTGTTGAGTTGGGTCTGGCCATGATCAACACCATACGGTATGTGCGGAAGCAGCTGAACTTTGACATGGACATGAGGATTGGGATCCACTCGGGCTCTGTCCTGTGTGGGGTGCTGGGCCTGCAGAAATGGCAGTTTGACGTCTGGTCGTGGGACGTGGGCATTGCTAACATGCTGGAGGCGGGTGGCATACCAGGCCGCATCCACATCTCAAGGGCTACTCTGGACTGCCTAGAAGGCACCTACAAGACAGAAGCTGGTCATGGTCGTGACAGGAGCGAATTTCTGCTCAAACACAACATCGACACTTTCCTCATCTGCCCtcaggaggaaaggaaagaagttGACCATGTTAACCCCCTTAAAGTCCAGAAAACTATTAAAACCTGGAACCCAGAGCTGCCCTTTGGGAACATCATTGACATGAATAGCATCCTGGCCTCCTTTACGAATGGCTCGATGCCCAACATATGTCAGTCTACCTCCAAGGAAATCAACAAACGCATCAAACACGCTATTGAGGTTCGAAGCAGTGAGCGTATGCGCAGAGAGCACATCACTCCACTGACCCTGAAGTTCAAAGACACGCACATCGAGGACAAGTTCTCCCAGATGAGAGATGAAATGTTCAACTCCAACCTGGTCTGCTCCTTCATCATGCTCCTCTTTCTCATGGCTGCCCAGGCCCTCATTCCTGCGCCCAGGCTGTTCCCAGCCGTCCTCCAGTTTTCAGTCTTCCTGCTCGTctacatgctgctgctgctgttggccCTGGCTGAAGAGTTCAGCTGCACTCCTGCACGGCTGCAGCACATCTGCTGCTGGATCCATGAAAACAACAGCGCCCGCAACCTCCTCACCCTTACCGCCATCGTCATCAACTTCGGCATGGTCTCTACTGACATGGTATGGTGCattctcacagacacacaggaggCTGAGGTAATGGACAGAACCGTCTTCACCGTCTGCACTTACCATGAGGTCTTTGTATTGAGTGGTGTTATCGCCATGGTGACTTGTGCCGTGTTCCTGCGTCTCAACTCTCTGCTGAAGCTGGCGGTGTTGCTGCTGGCGGTGGCCATCTACACCTACCTCACCCACCTGGCCTTCCTCACACTCACGCGCCATGATATGCTGCACAGGTCTCACTATGTCAGAAGAAAAGGAATTTCCATCCTTCTCATGGCCATGTTTATTATTGCTGTCTTCTACAATGGACGACAGTGGGAGGCCACTGCCAGACTTGACTTCCTGTGGCGTCTGCAGGCCCAACAGGAAGTGGAAGACATGAGGGAATTGCGGGAACACAACGAGTGTCTATTACACAACATCCTGCCTGTGCACGTGGCGCAACATTTTCTGGACCGGAGCAAGAATGACGAgGAGCTTTACTCCCAGTCCTACGATGAAGTCGGTGTCATGTTTGCCTCCATCGCTGGGTTCAATGAGTACTTTGAGCAGAAAGAGATCAGACATGAAGGAGTGGACTGCCTCCGACTTCTGAATGAGATCATTGCTAGCTTTGATGATTTGTTGGAGGAGTCGTACTTTCACTATGTGGAGAAGATCAAGACCATTGGGAGCTGCTACATGGCAGCCTCTGGCTTAGCTCCAGACGGACAGgcaTCTATGGATGAATGGAATCATTTGAGTGAGCTGGTTTTGTTTGCGCTGGCAATGCAAGAGACCTTGAAAGAGATTAACAGGCTCTCTGCCAAAAACTTTCAGCTGCGTGTGGGCATTGCCCACGGGCCGTTGGTCGCAGGGGTGATCGGTGCCACCAAGCCGCAGTATGACATCTGGGGGTCAACCGTGAACCTGGCCAGCCGAATGGACAGCACAGGTGTGAGCGGACGCATCCAGGTACCTGAGGCCACGCGCAGGGTCCTGGCAGAATGGGGTTTTGTCTTGGAGCTACGTGGAGAAATCTTTGTGAAGGGGGTGAGCGAGAGTCAGGGGAAAGTCCGCACCTATTTCGTCAGCACCATGCGCAGCAAGAGGGCCAATGCTGGTCGCATGGCGGCGCGGACAGGAGGACGCATGACACTCGCAGGAGTGGTGTTTGGTCTCGTCCAGGccaaacaaaaggaaaagaTGAGAGAGACTAATGGGGGGTTCTGTCTGACTCCCCGCACTCATCAATGCTGAAGGGACTTTTGGGGTCAGATGGTGGAGGACACAGCACAGCCATAATGTGTCTAATGGTTTAcagttttgttgtgtgtgttttatacttTGCCATAATAACCAAATTAGCTTCACAAACAGAAAAGGGTGTAGCTGTTAGACACAGGACCCAAATCCGGAAGAGCCTTTGTTCCTGTGTCCTCCTCTGCTTTCCTGTCAAATATGTTGGGCTGTATTGTACTTAATTGACATTTGGGGAAACTAATACAGGGGCAGGCTGGCTTCTTTTACAGTGAGTCTGTATGCCATCTTGAGGGCATTGCTTTCTATTTTTTGTTGCCATATCTACACATTGCAGTTTTAAGCATGTTAAGTTAATTTTGTACAAAACTAATAAAGGCCAACATGTCTTTTTTTGCTGTTATCCAAGCAATTCCCCAGACCTCTAAGCCAAAATACCTCAAAACAACCAGCTCAACCTCTCATAGACTTTTTAATGGCCTATACAATGCTGACTagtgtttttttactgtaatgtgCATTATTCATCAAGAGCAAATGACACAGAAGGTTGTATCTTGCGTGTAATAATGATGTAATAATGTTATACTGTGTCACTGTCATATAAAAACACTTTTCcactgcatttttgtttttttatgttttaactgAAGGATGACAAGCGCATCTAtgggacaaaaaaacaaacagaaactgATATAGTATATAATACGGAATAACAATGTTTATACCTCAGACAGACTGGGCTGGACCTTTAAAATAAGGCTGTGTTTTCTAAATGTTTGGTTTTCTGGAAGTGAGATTCATTTTTCCAAGGTATGTTcgttttttcaccatttttacaaaaacatttattagtCTACATGTTCTGCTAATAAAACCAGCAATTACAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251440 lncRNA upstream 93302 19278107 ~ 19279357 (+) True G185656
TU251378 lncRNA upstream 288875 19082696 ~ 19083784 (+) True G185599
TU251371 lncRNA upstream 326552 19045414 ~ 19046107 (+) True G185593
TU251370 lncRNA upstream 329111 19043224 ~ 19043548 (+) True G185592
TU251369 lncRNA upstream 348081 19024264 ~ 19024578 (+) True G185591
TU251505 lncRNA downstream 164051 19553274 ~ 19554235 (+) True G185696
TU251494 lncRNA downstream 183377 19572600 ~ 19576899 (+) True zgc:193593
TU251496 lncRNA downstream 183377 19572600 ~ 19620783 (+) False zgc:193593
TU251523 lncRNA downstream 263014 19652237 ~ 19652575 (+) True G185711
TU251528 lncRNA downstream 302913 19692136 ~ 19693056 (+) True G185716
XM_039781031.1 mRNA upstream 39043 19328007 ~ 19333616 (+) True LOC120546239
XM_039781673.1 mRNA upstream 103261 19260262 ~ 19269398 (+) True smyd2b
XM_039781692.1 mRNA upstream 135626 19204359 ~ 19237033 (+) True LOC120546624
XM_039781693.1 mRNA upstream 135626 19204708 ~ 19237033 (+) False LOC120546624
XM_039781341.1 mRNA upstream 246000 19102583 ~ 19126659 (+) True rps6kc1
XM_039781564.1 mRNA downstream 1782 19391005 ~ 19403199 (+) True parp1
XM_039781565.1 mRNA downstream 14633 19403856 ~ 19412698 (+) True lin9
XM_039781566.1 mRNA downstream 14989 19404212 ~ 19412698 (+) False lin9
XM_039781585.1 mRNA downstream 28747 19417970 ~ 19427489 (+) False acbd3
XM_039781584.1 mRNA downstream 28748 19417971 ~ 19427489 (+) True acbd3
TU251420 other upstream 164563 19204154 ~ 19208096 (+) False LOC120546624
unassigned_transcript_1081 other upstream 440272 18932316 ~ 18932387 (+) True trnae-cuc_27
XR_005637008.1 other upstream 1317733 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 1320588 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 1455411 17916853 ~ 17917248 (+) True G185237
XR_005636888.1 other downstream 40372 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 40372 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 40373 19429596 ~ 19539208 (+) False nhsl1b
TU251521 other downstream 245060 19634283 ~ 19648156 (+) False acp1
TU251678 other downstream 467512 19856735 ~ 19860205 (+) False kif25

Expression Profile