RNA id: TU251505


Basic Information

Item Value
RNA id TU251505
length 942
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G185696
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19553274 ~ 19554235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacaacatctgGAACTGATATAAATGTTGAAGTGATGGTGAAGATACTGTAAGTCAGAACATGAGTTGTATAtagtaaatgtattatttaggcTTCAGCTACAGTTTTGCAGGAGGTGACAACCAGGGGCCTGTTGGCGTGAGAGACAGTAAACAGATCCTGGTCTCTATGGAGATGAGCAGCTGAACAGTAAGACAAGTAACACTATGGATGCATAGTTTAACATGtctagaacacacacacgcacgcacacacacacacacacacacacaaagaactttaAAAACCTGATCTAGGGACATGCAAGACAATGAAGAGACAATGGCAGCAGCTTTTTGTCATATGAGGCGAGTCCTATTCATTACAATTCGCAGAGCAAAGAACAGTGGAAAAGGCAGAAAGACTGGTTTGTCAAATGTCTGTTGCTTGCACAAAGTCCAAATGTCACAGTtggaaaaagcagcaaaaaattcCTCAGTGAGCTCCAGAACCCCAGTTACAACCTGGTAATAATTTCTCCAAGCGACATAATATAGAGGAACAACAGGGTCTTGACAAACAGTTTATTAATTGATATTTAACTGGACAACAAAAACAGGGATTAATAAAAACTTGATCTATGTATTGTTGATTTAATAAGCAGTATTTTTTTGAATCCCTCTTTTACtgtcaaaataaatattaattaagGCCTTGTAGGATAACCTTTTCTAAGGCTCGATATCTTCCACAAGTTAGTGCATTCTTTGTCTAGGTTGTAGCTGCTGATGCTCTGGGGCTCTGGGAGCGTTTCAGGGCTGGTAATTCTTGCGGACAAAGGACAAAACATCATTTTTGGACAGTTTCTCAGGGTCCATTCGTGTCTGGGAATCGTGAACGATCACCCCGTCCACCCAGGCCCAGAAGTGCCGCTCAGAGTGGCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251470 lncRNA upstream 125811 19354616 ~ 19427463 (+) False acbd3
TU251479 lncRNA upstream 179341 19368053 ~ 19373933 (+) False si:dkey-206f10.1
TU251440 lncRNA upstream 273917 19278107 ~ 19279357 (+) True G185656
TU251378 lncRNA upstream 469490 19082696 ~ 19083784 (+) True G185599
TU251371 lncRNA upstream 507167 19045414 ~ 19046107 (+) True G185593
TU251494 lncRNA downstream 18365 19572600 ~ 19576899 (+) True zgc:193593
TU251496 lncRNA downstream 18365 19572600 ~ 19620783 (+) False zgc:193593
TU251523 lncRNA downstream 98002 19652237 ~ 19652575 (+) True G185711
TU251528 lncRNA downstream 137901 19692136 ~ 19693056 (+) True G185716
TU251630 lncRNA downstream 154096 19708331 ~ 19708930 (+) True G185793
XM_039781569.1 mRNA upstream 11442 19429596 ~ 19541832 (+) False nhsl1b
XM_039781568.1 mRNA upstream 11442 19429597 ~ 19541832 (+) False nhsl1b
XM_039781571.1 mRNA upstream 11442 19429597 ~ 19541832 (+) False nhsl1b
XM_039781572.1 mRNA upstream 11442 19476878 ~ 19541832 (+) True nhsl1b
XM_039781578.1 mRNA upstream 11442 19486241 ~ 19541832 (+) False nhsl1b
XM_039782811.1 mRNA downstream 18338 19572573 ~ 19574456 (+) False zgc:193593
XM_039781955.1 mRNA downstream 30467 19584702 ~ 19598107 (+) False si:ch211-225h24.2
XM_039781954.1 mRNA downstream 30469 19584704 ~ 19598107 (+) True si:ch211-225h24.2
XM_039782308.1 mRNA downstream 79265 19633500 ~ 19648130 (+) False acp1
XM_039782313.1 mRNA downstream 79265 19633500 ~ 19648130 (+) False acp1
XR_005636888.1 other upstream 13966 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 14066 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 14066 19429596 ~ 19539208 (+) False nhsl1b
TU251420 other upstream 345178 19204154 ~ 19208096 (+) False LOC120546624
unassigned_transcript_1081 other upstream 620887 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251521 other downstream 80048 19634283 ~ 19648156 (+) False acp1
TU251678 other downstream 302500 19856735 ~ 19860205 (+) False kif25
TU252459 other downstream 2390508 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2431544 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 4024143 23578378 ~ 23589689 (+) True nfkbie

Expression Profile