RNA id: TU251724


Basic Information

Item Value
RNA id TU251724
length 1560
lncRNA type sense_over
GC content 0.45
exon number 4
gene id G185869
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19945093 ~ 19980090 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCCAGCTCAGGGTGTAAGCACTGCTGGCATTGAGGACATTCTTATGCAGAAAGAGGTGAGGTTTGGCAGGGTCGCTGTGGACGTGGAAAAGGCGGAAGTTGGCGTGCTCAAGCTCCTTGAGCAGGCTGAACCAGTACCGCACCACGGATGGGTCATCGCCACCCACTTCAAAGCCCGCCCAGTGCAGGTGAAGCTCCAACAACAGCTGACCCACTGAGTCCAGAACTCCTTCCAGGATGAAATTCTCCAAAATCTTCCACTCTGCACTCTCCATATCCGCCTTCAATACATCCACCTAGAACAAGAGGGGGAAAACACATTGGGTGTTGTTCTTCTTCAGGAGAAGTGACAAGCCCTGGCAAGACTCCTGTCTGGTGTGAGGATAGTCCATATGGTGTTGGAGATTTGAAAAGATGTCTTGTGCTACTCTGCTGTGAAGCGTCAGCCACACTAAATGGTCCTTAACTAACTATGTTGGAAGGAAATTAGAAGATGGCCGTTTCCTGGTGGTTGGAGAGCAAATCATTAAGGATGGTGGCCAGTTTTTTGGTGTTGGCGTACTGACGCTGGGCGACAATGGCCGGGTTGGGATCCCTCCAGTCTACAGAGAGCCGATGAAGCCACATTTCAGCTTGCTGCAGGTGAGACTGCTTCAGACTGGGATCAAAGCAGTGGACCTCACATCCTGCCCTGGCGAGAGAACGCTCCAGGGACCGATCGTCCACACCCAACCTGCAGCAAACACAGCACAAGACAACCAGGGTTTTTTTTCTGGCTGGAGAACAGCGACGTGGATAAACCTATTGCTTGTTGGGAAGCAACCAGTTGTGACAGGAGCAGGTGAGTGTTAATGTTTGctttcagcacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtaatgtaTTGTGTTGCACACACAGGCACTCTTTaaaactgtatttcactgtaatcCGATCGCAAACAAGAAAACTCCAAAACTTTAATAACACTAAGTCCCAACTAACTCTCAGATTGATTCAGTAACTGCAGACTGAATAATAGTATATACATCTGAGgccataaaatataaaacacatcTGTACAAGCTTCTTTCTTCCACACCTTCAACAAACAATAGAGCGGAACAGGACATGTACAAAAGCAACCGTTCACCCCTTAACAATGATCAGCACCTTTTATCCTCGGTGTCCACATGGCGCTAAGTTTTATCAGCGTTCTCTCAATACCTTACCAATGTTAAAGTCAGCAGAAAGTCAAAACTCAAGCCTTCAAAAAATGGACCAAACTCCAGGGGTCACAAACCTACTGTCAACTTTCTTCTGAATAGATGAAATTACTGATATATCCTATATATTACAAGGAATAGCTTATAATATATAACTAGGCTAtaactaaaataaatacaattttacTGTTTGCAGTGTCTTACACCACTGCCAGTGCCTATCTTACATGTGGAAGATGACAGCTCCACTTGCTCTGTCTGATTTATGGCAACAACATCTGCTTGTGCCATAAATATCCATAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251673 lncRNA upstream 93382 19850174 ~ 19851711 (+) True G185827
TU251641 lncRNA upstream 205803 19739040 ~ 19739290 (+) True G185804
TU251639 lncRNA upstream 206829 19737994 ~ 19738264 (+) True G185802
TU251637 lncRNA upstream 209037 19735840 ~ 19736056 (+) True G185800
TU251636 lncRNA upstream 209369 19735518 ~ 19735724 (+) True G185799
XR_005636841.1 lncRNA downstream 281695 20261785 ~ 20359609 (+) False LOC120546242
XR_005636840.1 lncRNA downstream 281695 20261785 ~ 20288756 (+) False LOC120546242
XR_005636839.1 lncRNA downstream 281695 20261785 ~ 20286864 (+) True LOC120546242
TU251786 lncRNA downstream 281719 20261809 ~ 20288755 (+) False LOC120546242
XR_005636997.1 lncRNA downstream 646458 20626548 ~ 20628265 (+) True LOC120546929
XM_039781451.1 mRNA upstream 1062 19919473 ~ 19944031 (+) True cdc40
XM_039782594.1 mRNA upstream 84876 19852643 ~ 19860217 (+) True kif25
XM_039781136.1 mRNA upstream 107695 19834485 ~ 19837398 (+) True LOC120546286
XM_039781219.1 mRNA upstream 114250 19745177 ~ 19830843 (+) True fig4a
XM_039781220.1 mRNA upstream 143116 19745177 ~ 19801977 (+) False fig4a
XM_039781449.1 mRNA downstream 2311 19982401 ~ 19992886 (+) False slc22a16
XM_039781446.1 mRNA downstream 3184 19983274 ~ 19992886 (+) False slc22a16
XM_039782179.1 mRNA downstream 637160 20617250 ~ 20622631 (+) True LOC120546927
XM_039782178.1 mRNA downstream 637160 20617250 ~ 20622631 (+) False LOC120546927
XM_039782180.1 mRNA downstream 637384 20617474 ~ 20622631 (+) False LOC120546927
TU251678 other upstream 84888 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 296937 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 405785 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 405885 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 405885 19429596 ~ 19539208 (+) False nhsl1b
TU252459 other downstream 1964653 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2005689 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3598288 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3598288 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 4099513 24079603 ~ 24083104 (+) True G186975

Expression Profile