RNA id: XR_005636840.1


Basic Information

Item Value
RNA id XR_005636840.1
length 490
lncRNA type inter_gene
GC content 0.50
exon number 5
gene id LOC120546242
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 20261785 ~ 20359609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGCCTCTTCCTGTCTGCACAAGGAAATCCTGTTCATAAGTCTGTCTTTGTGAACAGCCCAGGTCTGCCTCCAGACTCACACTCATCCCAGGCAGAGATGTCACTCCACAATGAACTCTTGAATGCTTGAAGGAAGTGAGGAGCAAGATTAACTACACTGGAATCCTGGCTGCGGCTGAGCTGAATCCTCGCACCATGTCTGCTTTAGTCAGCACTGCCTCCAGTGCATGTCTCCCAGTCACGCACCAACAACCCCTGACTGAAACGACTGCCATCTCCATTACTTCAAGatacacagaggcacacaaagCAAGTCTAATGCTTTAAGGTCTACCAAGCCTGGCTGCCTGAGTAAAGCTCCTTTTAGTCCGTGCTGTAACTTCTACCCATCTGCAAGTGACCCAGTTGCCCCAGAGCACCCCCTACAGATGTGATGTAAAGGAAAGAGAATTATTGCAAGTGTAGCATGTGTCTCAGTAGCGGAGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251724 lncRNA upstream 281695 19945093 ~ 19980090 (+) True G185869
XR_005636880.1 lncRNA upstream 288442 19950611 ~ 19973343 (+) True LOC120546509
TU251673 lncRNA upstream 410074 19850174 ~ 19851711 (+) True G185827
TU251641 lncRNA upstream 522495 19739040 ~ 19739290 (+) True G185804
TU251639 lncRNA upstream 523521 19737994 ~ 19738264 (+) True G185802
XR_005636997.1 lncRNA downstream 337792 20626548 ~ 20628265 (+) True LOC120546929
TU251913 lncRNA downstream 404414 20693170 ~ 20702644 (+) True G186025
TU251924 lncRNA downstream 457561 20746317 ~ 20758806 (+) True G186035
XR_005636824.1 lncRNA downstream 700549 20989305 ~ 20991418 (+) True LOC120546176
TU252007 lncRNA downstream 731065 21019821 ~ 21023878 (+) True G186088
XM_039781448.1 mRNA upstream 268899 19977864 ~ 19992886 (+) False slc22a16
XM_039781447.1 mRNA upstream 268899 19977864 ~ 19992886 (+) True slc22a16
XM_039781449.1 mRNA upstream 268899 19982401 ~ 19992886 (+) False slc22a16
XM_039781446.1 mRNA upstream 268899 19983274 ~ 19992886 (+) False slc22a16
XM_039781451.1 mRNA upstream 317754 19919473 ~ 19944031 (+) True cdc40
XM_039782179.1 mRNA downstream 328494 20617250 ~ 20622631 (+) True LOC120546927
XM_039782178.1 mRNA downstream 328494 20617250 ~ 20622631 (+) False LOC120546927
XM_039782180.1 mRNA downstream 328718 20617474 ~ 20622631 (+) False LOC120546927
XM_039782183.1 mRNA downstream 340085 20628841 ~ 20638714 (+) True epm2a
XM_039782184.1 mRNA downstream 340086 20628842 ~ 20638714 (+) False epm2a
TU251678 other upstream 401580 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 613629 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 722477 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 1655987 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 1697023 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3289622 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3289622 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 3790847 24079603 ~ 24083104 (+) True G186975

Expression Profile