RNA id: TU251924


Basic Information

Item Value
RNA id TU251924
length 435
lncRNA type inter_gene
GC content 0.60
exon number 3
gene id G186035
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 20746317 ~ 20758806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTCGATGTGGTCCTGCAGAGAGTCGATCAGCAGATCCCCCACAGGCTGCCAGGTAGCTTTGGTGTCCTCTGCCCGGGTCAGCTGCAGGTCCAGCTGATCCATGGAGCTCTGCAGCTCCTGGAGTCGCTCCAGGGCTTGCTCCACTTGACTATGCCAGCCACCCATGTGTCCTCTTAGACGCTCCCACCGCTCCCTCACCTCGCCGGTCTGCTTGCGGATGGCCCGGGCCAACCCTCGGGCCTTCTCCTCTGGGGTGAGGTCTGTCTTTGGCTGCAGGTTCTTGCGTGGCTCTCCGGGACCCTCGATGGGCTGGTCAGCGAGAAACATTCGTGCTTGATCCAAAGTAGTGATCACCAAGTGCTCACGTTCCTTCAGTTCTGACCGTAGTACCGTGCAGTGGTTTTGCTGTTGCAGCAGGGTGGGGACATCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251913 lncRNA upstream 43673 20693170 ~ 20702644 (+) True G186025
XR_005636997.1 lncRNA upstream 118052 20626548 ~ 20628265 (+) True LOC120546929
XR_005636841.1 lncRNA upstream 386708 20261785 ~ 20359609 (+) False LOC120546242
XR_005636824.1 lncRNA downstream 230499 20989305 ~ 20991418 (+) True LOC120546176
TU252007 lncRNA downstream 261015 21019821 ~ 21023878 (+) True G186088
TU252015 lncRNA downstream 273835 21032641 ~ 21033182 (+) True G186094
TU252027 lncRNA downstream 301951 21060757 ~ 21061976 (+) True G186106
TU252046 lncRNA downstream 392638 21151444 ~ 21153175 (+) True LOC120546175
XM_039782183.1 mRNA upstream 107603 20628841 ~ 20638714 (+) True epm2a
XM_039782184.1 mRNA upstream 107603 20628842 ~ 20638714 (+) False epm2a
XM_039782185.1 mRNA upstream 107603 20629229 ~ 20638714 (+) False epm2a
XM_039782178.1 mRNA upstream 123686 20617250 ~ 20622631 (+) False LOC120546927
XM_039782910.1 mRNA downstream 119674 20878480 ~ 20881587 (+) True LOC120547338
XM_039782177.1 mRNA downstream 132602 20891408 ~ 20928761 (+) True mthfd1l
XM_039782175.1 mRNA downstream 145829 20904635 ~ 20928761 (+) False mthfd1l
XM_039782176.1 mRNA downstream 146697 20905503 ~ 20928761 (+) False mthfd1l
XM_039780932.1 mRNA downstream 178712 20937518 ~ 20980163 (+) True akap12b
TU251678 other upstream 886112 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1098161 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1207009 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 1185937 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 1226973 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2819572 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2819572 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 3320797 24079603 ~ 24083104 (+) True G186975

Expression Profile