RNA id: XM_039780898.1


Basic Information

Item Value
RNA id XM_039780898.1
length 3203
RNA type mRNA
GC content 0.52
exon number 8
gene id tbx18
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13056433 ~ 13066587 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCACTAAGCTCCGGTTGTTGACACTCTCCAAAAGTCCGCACGGCTCTCACGGATAACGGAGACATTATTAGGCTACAGCTCGTCCCGGCTCCCTCTGTTTCCTCTGCTGTCCGGCTCCAGGACGGACAACCCGTCGCACGGAAAGAACTGGACTGCCATCGTGGATTTCCTTGTTTTTCGACTCGGTGCGTTTTGAACTTTTCTTGCTCCCTGCAAGCTCGTGACGCCGTCTCTTTCCTCTCGTTCCTCTGCTCGGAGACCGAGAGAAATGGCAGAGAAGCGGCGGTCCCCGTGCGCGCTGAGTGTTAAGGCGCATGCATTCTCGGTAGAGGCGCTGATCGGAGCCGAAAAGAGACGCAGGAAGGCCGGGGAGGATGCTGTGTCCGCCGACTACGAGGACGGAACTGATGTATCTGATCTAACCGGCAGCCCGGGGCCGCGAGCCGACCGAGCGTGCACCAGCGACCGGGGCAGCGAGGCAGAATGTGCAAGTGACGGATCCCCAGAGAGCGAGGACGCGCTGCTCGAGAGCCCGCAGCCTGCAGCTCCGTGCACGGCGCCGGTAACCGCGAGCGGAGAGGAGACCCGCGTGGAACTGCAAGGATCAGACCTGTGGAAACGGTTCCACGAGATTGGCACGGAAATGATCATTACCAAGGCTGGACGGCGGATGTTCCCTGCTATGCGTGTGAAGATTACGGGCTTGGACCCACATCAGCAGTATTACATTGCCATGGATATAATCCCCGTGGACAACAAACGatacagGTACGTGTACCACAGCTCCAAGTGGATGGTAGCGGGGAATGCGGACTCGCCTGTGCCGCCCAGAGTGTACATCCACCCGGACTCCCCGGCCTCAGGAGAGACGTGGATGCGTCAGGTGGTCAGCTTCGACAAACTTAAACTGACCAACAACGAACTGGACGATCAGGGACATATCATTCTGCACTCCATGCACAAGTACCAGCCGCGGGTCCATGTGATCCGTAAGGAGTGTGGAGAGGAGTTATCCCCAGTGAGAGCCATCCCTGCTGGGGAAGGCACCCGCACCTTCGCCTTCCCTGAGACGGTGTTCACCACCGTCACAGCGTATCAGAATCAACAGattacaaGGCTGAAAATTGACAGAAACCCATTTGCCAAAGGCTTCAGAGACTCTGGCAGAAACCGGATGGGTCTGGAGGCTTTGGTTGAGTCTTATGCATTCTGGCGCCCATCTCTGCGAACGCTCACATTTGAGGACATCCCTGGCATTACCAAGCAAGGGATCCCAGGAGTTCATGGTGGGATCGGACCATCATCTCACCTGCTCTCCACGTCCCCGTGCTCCTCACCTTTCCAGGTCTGCCCTCTCAGCCCGCCTGACTACACCTGCAGCCGACCCACACACCCTCTCCATCGCTACAGCAACCCCCCGGAGCCGTTCCCCCCTCCCAGAGGTCCATCGGCGTATGAGGGCGAAGGATTCTGTTCTCTGCCTCTCCCTGCTTCTCAATTTGGCTATCTATCCAACCCCACGCCGCAGGGTTACGCTGGGCTTCGCCTCCACACACCGCCCTACAGCCTGTACGGTTACACATTCCCTCCCTCGCCGCGCCTTGCAGCCAGCCCTGATAAAATGGCTGCCGCTGCCACTGCCAATCATCAGAGTCCCTTCCTTGGCTCGTCTCCCAGTGGGACTCTAACGGACAGTCTGGGTGTACTCAGTGGAGGACAGCAGGGCTTCTTGTTTGACTCCCGGACTTTAGGACTGACAGGTAGCCAGCCGGGAGGCGGGGCCTCACAGGTCACTGCCCACATGGGCTGAATACGACTCCGGACATCTAGCGTTGTCACGAAAAACGAAACTGGTTCAGAACGTTCTACGAATTAATCACCCACGTGCTGAAAAAGCATCAGGCTGAATTGTGGACAAACAGAGAGGAGTGACAGATCAAGCCATTGGCCTCTGTGAGCATAAAGAGCTTTTAACTGAAGGGAATATTTTTTACGTTCTTATCTTTTAAGTATGTTCTCTAGGACAATGCACATGCAGCTGCAGTGGTCACTAAAGGGAGAAACTACCTGCAGCTTTGGATAAGGAGTCCAAACGATGTAACCAGCAACTAAACTGGAGCTGAATATGGACTGGGCAGAAACTGGGCTGGCCCAGGCACTCAAAGCAAGCACTTCAACACCTGGCACGAGGCCTTGAAGCAGTAACTGTTAGACTCACACAGCATTCTACATTGCCTCCTTGATCTTGCCTACTTTGGATGGAGTTTCTGAACACTACTTTTGAACTTGTTTTTTACGGGATACATTGACTAAATTCCTTTCGTCAGTTCAATTCTTCGTCATTACATGCCTGGCGGTGTTCTCGATCAAATCTTTGGAATAACAAACATGTAGTCCATCTAGTAATAATGCACTACAGGCAGGGCCGTATCACCACTTTTTACACACAACACCAGGAGCCTGTCACATATTAGCGTGATGACATCATGGCCTTAAGAGACCATGGGAGATATCCCAGTGACAGTTATGGACTGACGAGGTTAAAGCTGTGGGAGAATTATGGATGAAGGACTGATCTACGTATTCTACGTCTGGTTTGACAGATGTTTCTTTGATGCAGCTGTTTTGATGGCAGGCTGAAGTACACCTTCCTTTGTGGGACACAGGCGCAACTGTGCAAGATGACTCTGTATATAGCGAGGGGAAGGCGGGTGGGAGgagagatgtgtgtgtatataaaaggCTGTGTGACCCTTCGCACTTAAAAACCCCAATGCACCTGCTTCTGCTCTTTAGACTGGGTCAGGTATGCAACAGCCGACCGTGAACTTGACCGAAAAGCTTTTCTTCGCAAACACGCGCTATATCAGCACGCCCTTTGGCCGAGGACATTAACATGTTCTGTGACCTTTTTTGAgccaaataaaatataaatgtatgtattcaTGTCACAATGTTAATATGTAATCAATATCTTACTAATTTAACTGATTTCGTTTTGTTTATGGCAATTGTGAAcatgccagtgtgtgtgtgggagcgttttctttccacatttttttttttaaaagtgaagCAATTGCTTACAATATAATATTTccttgtgaaaacaaaaaaagtacgCTTACTGTTCTCCCTTATGTATGTGCTAGTGgcattgtgaatgtgtgtgtgtctgtgtgcgatAAAGCAGTCAATGATT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10183 TBX18; T-box protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249087 lncRNA upstream 64628 12956517 ~ 12991805 (+) False LOC120546167
TU249089 lncRNA upstream 64628 12978770 ~ 12991805 (+) False LOC120546167
TU249091 lncRNA upstream 65020 12946999 ~ 12991413 (+) False LOC120546167
TU249178 lncRNA downstream 78888 13145475 ~ 13210406 (+) False G183994
TU249185 lncRNA downstream 104335 13170922 ~ 13172244 (+) True G184000
TU249274 lncRNA downstream 348653 13415240 ~ 13415570 (+) True G184071
TU249277 lncRNA downstream 367398 13433985 ~ 13434206 (+) True G184074
TU249278 lncRNA downstream 367625 13434212 ~ 13434504 (+) True G184075
XM_039780919.1 mRNA upstream 48464 13006637 ~ 13007969 (+) False LOC120546167
XM_039781118.1 mRNA upstream 133877 12908967 ~ 12922556 (+) True selenoi
XM_039781116.1 mRNA upstream 149128 12890687 ~ 12907305 (+) True agbl5
XM_039781117.1 mRNA upstream 149128 12890687 ~ 12907305 (+) False agbl5
XM_039781115.1 mRNA upstream 150738 12889261 ~ 12905695 (+) False agbl5
XM_039782720.1 mRNA downstream 73394 13139981 ~ 13141521 (+) True irak1bp1
XM_039782217.1 mRNA downstream 154519 13221106 ~ 13228478 (+) True enpp5
XM_039782214.1 mRNA downstream 163379 13229966 ~ 13249155 (+) True clic5b
XM_039782216.1 mRNA downstream 169991 13236578 ~ 13249155 (+) False clic5b
XM_039780978.1 mRNA downstream 322228 13388815 ~ 13412812 (+) True opn8a
TU249092 other upstream 48022 12990676 ~ 13008411 (+) True LOC120546167
XR_005637057.1 other upstream 2325651 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 2389961 10622736 ~ 10666472 (+) True G183540
TU248395 other upstream 2944072 10111237 ~ 10112361 (+) False LOC120546402
XR_005637038.1 other upstream 3735005 9296061 ~ 9321428 (+) False LOC120547211
TU249176 other downstream 78888 13145475 ~ 13150078 (+) True G183994
TU249175 other downstream 139721 13206308 ~ 13247416 (+) False G183994
XR_005636930.1 other downstream 957897 14024484 ~ 14121514 (+) False LOC120546742
TU249487 other downstream 1295754 14362341 ~ 14381187 (+) True G184231
TU249525 other downstream 1458549 14525136 ~ 14529370 (+) True G184258

Expression Profile