RNA id: XM_039780903.1


Basic Information

Item Value
RNA id XM_039780903.1
length 2093
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC120546154
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14629113 ~ 14634460 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTAATTTCTtacagaaagaagaagaagaagaaaaaaatgtcttgTGGCCAATAATAATTAATGGCTGGGCAGGGTATTTATTATTGAACGGACTTGGAGCAACCGGTAGCCGGGGGTGAAAGAAGTGACAGATTGAGTATAGGAGTGGCCGTTATTGGCTCTATAAAAACGAGGGGTCCGGCTAGAGAGGAGCACCCTGGGGTCCTGGGAACTTGATTCTACAGGTTCTGGGAGACGTGAAAGACCAAACGGAGACGCGAGAGGATTAGAACACTCTTTTGCaccctatttttttttcttatttcttcTCATTGGTGCCCCTCGTCCGGCCGCCAGCATGATGTCCTATTTGAAGCAGCCGCCGTACACGGTGAACGGACTGAGTTTATCCTCAGGAGTGGATCTGCTGCATCCTTCAGTGGGATACCAAGGAACCCCTCgcaaacagaggagagagaggacgaCCTTCACCCGGGCCCAGCTCGACCTGCTGGAGAGTCTGTTTAACAAGACTCGGTACCCGGACATCTTCATGAGAGAGGAGATGGCCTTAAAGATCAACCTGCCAGAGTCCCGAGTGCAGGTATGGTTCAAAAATCGACGAGCTAAACATCGCCAACAGGCCCAGCAAACCCAAGGTGGAGTGCAGAACAAGGCAGTCAGCAAGCCGGTGAAAAAGAAGAGCTCTCCGGTCAGAGAGGCCAGCTCAGAGAGCGGAGCCAGCGGGCAGTTCACGCCGCCCTCGACCACCTCCCTCCCGGctgtgagcagcagcagcagcagcgcggcACCACCGGTATCTATCTGGAGCCCGGCCTCCATCTCCCCGCTGTCCGACCCGCTGTCTacctcctcctcgtcctgcATGCAGCGCTCCTATCCCATGGCCTACACCCAGGCCACGGGCTACAACCAGGGCTACACGGGCTCCTCGTCCTACTTCACCGGGATGGACTGCGGCTCCTACCTTTCGCCTATGCACCACCAGCTACCCGTCGCGGGCTCCACCATGAGTCCCATGGGCAGCAACGGGGTGTCCAGCCACCTGAGCAACGCGTCTTCCCTGTCCTCGTCGGCGTACGGCGCGGCGGGGCTGGGCTTCAGCGGCGCCGCAGACTGCCTGGACTATAAGGACCAAACAGGCTCCTCATGGAAGCTCAATTTCAACGCGGACTGTTTGGATTACAAAGACCAAGCAGCGTGGAAATTCCAAGTATTGTGAGAGGAGAGAATTCAAAGGGACAATATTCACAAACTGCAGACTATACAGGCAAATTATAAACCCAAGCTTGGGAGCAGAAAGTGCGGCGTGtttccaccaccaccacaggcCCCAACTTCTACCTCGGGCAGAGCAGAACGGGAGTGCCGGCCGGTTGTCTCACATGTTGGGTTAATTTATTGAACATTCAGACTTATTTCTCCCCAACTTTGATCAAGGACATGGAACAAATGTGTTGaccaaaaggaagaaaaaaaaaggatcaaaaGAGCGAAAGATCCAAGCCTAAGTTGGTTGAGTTTGAGGAATAGTACCGTTTTTTTTAAGCTCCTTAAAGACTCCCCtctcttgtcttttctttttattttgttggcaCGCTGAAGGGCCCCTTTGATCAaagcgttgtgtgtgtgtgtgtgtgttgtagagagtgagtgtgtgagagagagaggctctGACATGAACCTGGATGCACTATTAATTTATAAGAAATGTTTAAAACTAGTTTTAAGAGACAATCAATCCGTTTGCGTGTGCTCATAAATGTCCCTTATGTGTTTTTGAATTATTTCCCCCCATGTGTtagatttctttaaaaaaaaaaaaaaaaatgtgattctttGTACTACCCTGTATGCAGTTTTGCTTTGCGCCATAAATGCGCCACAAACCCAGCTGTGAATTTGATAGATTTATTTCCATGTCTCGAGTGTTAAATGATAAATTATTATTAGGACATATTAGGTGAATTAAATAGGGACTGCAGAGTCAATCAAGCCAGCAGCCAGCAAGGTCCACTTGAGCTGTAAAGTGATGCGAGAAGGCCACAAACACACTAAACAACAATAAAGACCACTTGACCTGACCCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249531 lncRNA upstream 23440 14558542 ~ 14606665 (+) True G184263
TU249514 lncRNA upstream 64978 14476624 ~ 14565127 (+) True G184249
TU249501 lncRNA upstream 205252 14422327 ~ 14424853 (+) False LOC120546619
TU249492 lncRNA upstream 259337 14370124 ~ 14370768 (+) True G184235
XR_005637035.1 lncRNA upstream 641449 13956925 ~ 13988656 (+) False LOC120547176
TU249632 lncRNA downstream 21174 14655634 ~ 14656247 (+) True G184339
TU249634 lncRNA downstream 25859 14660319 ~ 14660735 (+) True G184341
TU249635 lncRNA downstream 26286 14660746 ~ 14661130 (+) True G184342
TU249636 lncRNA downstream 27634 14662094 ~ 14662481 (+) True G184343
TU249638 lncRNA downstream 32766 14667226 ~ 14667587 (+) True G184345
XM_039782744.1 mRNA upstream 27285 14595161 ~ 14602820 (+) False LOC120547239
XM_039782743.1 mRNA upstream 27285 14595164 ~ 14602820 (+) True LOC120547239
XM_039782742.1 mRNA upstream 27285 14595167 ~ 14602820 (+) False LOC120547239
XM_039781697.1 mRNA upstream 81174 14540615 ~ 14548931 (+) True LOC120546629
XM_039782853.1 mRNA downstream 47781 14682241 ~ 14699493 (+) False prpf39
XM_039782852.1 mRNA downstream 47782 14682242 ~ 14699493 (+) True prpf39
XM_039782857.1 mRNA downstream 65506 14699966 ~ 14702153 (+) True faua
XM_039781334.1 mRNA downstream 304458 14938918 ~ 14954916 (+) True LOC120546410
XM_039782494.1 mRNA downstream 478710 15113170 ~ 15116784 (+) True mgat2
TU249525 other upstream 100735 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 248918 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 508591 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1382689 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1480027 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 655214 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 667465 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 1026113 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 1060484 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 1060484 15694944 ~ 15716284 (+) False dpf3

Expression Profile