RNA id: XM_039780960.1


Basic Information

Item Value
RNA id XM_039780960.1
length 2470
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC120546187
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18761417 ~ 18779102 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCACTCCTCTAGGCCTTCCTCTCCGGAGTTTCCAAGTTTTCAACTTGAGGAAAATAACTTGCAATAAACATCATTTCGGATAGCACAGaataggctatagcctactgTCATTATGTGGCTGTCTTGCGGATGCGCTTCAAAGTACGTCGTTTCTTTCAGTCGTCGTGTCTTCAAATCTTATTTCCATGTTTTGGGTCGATGGAGGTGTAACGTAGCAGCGTTGATGCCCGAAGCTGCGGGCTTTGAAGGCGTCAGCGGCCACTCAGCGCTGCAGGAGTTCTCCGTCTCCCACAGCGCCAGCTTCTGGGCCGCTGCGGCGCGTCAGAGACTGAGCTGGATCAGTCCTTTCCACACGGCCCAGGACTGTGACCTGAGCCGGGGGGAAATCAAATGGTTTGAAGGAGGAAAGCTGAATGTGTCCGTGAACTGTCTGGACCGCCACGTGCACGCCTGTCCTGAGCGGGTGGCCCTGATCTGGGAGAGAGATGAACCGGGGTCAGAGGTCAAGATCACCTACAGGCAGTTACTGGAGATGACATGTCGCCTGGGCAACCTGCTAAGGCGGCGTGGCGTGAGGAAAGGGGACTGTGTCTCCATCTACATGCCTCCATGCCCTCTGGCTGTGGCGTCCATGTTGGCCTGTGCCCGTATCGGTGCAGCACACAACGTGGTGTTTGCGGGGTTCAGTGCCGAGGCGCTCGCTGAGCGAATCAGAGACGCCCAGTCCAGCACCGTCATCACGGTGAACCAGGGCGTCAGAGGGGGTAAGGTCACCGAGCTGAAAAAGGCGGTGGATACAGCACTTCAGAGCTGCCCGACAGTACAGCAGGTGTTCGTTGCCATGAGAACTGATAATCCGGTTGCCATGACAGCCAGAGACATCGTGATGGAGGAGGAGATGCTCAAGGAGGATTTGGTGTGTGAGCCTGCTGCCATGGACAGTGAGGACGTCTTGTTCCTCCTTTATACATCAGGCAGCACAGGGAAGCCCAAAGGACTTGTGCACACTCAGGCTGGATACCTGCTGTATgctgcactcacacacaaaTATGTCTTCAACTACTCTGATGGAGATGTGTTCGGCTGTGTGGCAGATATTGGTTGGATAACAGGACACAGTTACAGTGTCTACGGGCCTCTGGCCAACGGGGGAACCACTGTCCTGTTTGAAAGCACTCCCATTTACCCCGACCCAGGAAGGTACTGGGAGATGGTTCAGAGACTTAAGATAAACCAGTTTTACGGGGCTCCCACAGCGATCCGCCTGCTGCTCAAGTACGGAGACCAGTGGGTACACAAATACGACCGCTCAACACTCAAAACTCTCGGTTCTGTGGGTGAGCCCATCAACACTGAAGCTTGGGAGTGGTACCACAGAGTGGTTGGGGACGGACGCTGCCCTGTGGTGGACACCTGGTGGCAAACAGAGACAGGTGGCATCTGCATCACCCCAAGGCCATCAGAACCAGACGCAGAGATTGTCCCAGGAATGGCTATGAGACCTTTCTTTGGCATTAAGCCCGTGCTCATGGACACTaagggAAAAGTGCTGACTTCCAACGACACATCTGGAGCTCTGTGTATAGCTCAGCCTTGGCCTGGTATGGCCCGAACCATTCATAACAACCACCAGAGATTTATTGAGACCTACTGTCAGCCTTATCCTGGTTACTTCTTTACTGGCGATGGCGCCTATCGCTCTAAGGAGGGGTATTACCAGATCACTGGGCGTCTTGATGATGTCATCAACGTATGCGGTCACAGGATTGGGACGGCAGAGATAGAGGATGTGGTGAATCAATACCCTGCAGTGGCTGAGTCTGCTATCATAGGATACCCACATAACATCAAAGGACAAGGTGTGTATGCCTTCGTGGTGCTAAAAAAGGGTGTGAAGATTCAAGAGGAGGAACTGTCTCGGCAGCTAAACAACATGGTATTGAAAAAGATCGCCAAGTACGCCTGTCCAGACTTCATCCAGTTCGTCCATCGGCTGCCGAAGACCCGCTCAGGTAAGATAATGCGCCGGGTGCTGCGGAAAGTGGTGGAGCAAGACTTGGACGGGTTGGGTGACCTCAGCACGCTGGATGATCCTGCAGCAGTTGAAGAGATCATCCAAGGCCACCGTGAGCTCTGTAGTAAACAACAACCgtgattgtgtgttttctgaaaacattgtcATCTGAAAAAGGAATATGAAACTGATGCTTGCACGTTTCACTCCATTTCACTAAATCAGACGTGTGCCATCAAACAAATattctttgtttttattgtacatATGATATTTTTATGAAATCAGGTAAACAACTCTTTAAAACTATGCATGAACCACAGATGTACTCTGCTCTTAATAGGCGTTGAGAGAAAGAGCTGAGAACATTGCATTTATTACAAAATTGGAACCAATATTCCCAATGTAATGATTGTAAACACAATACAATAAACAAATGTAAAGGCACTTAAGA

Function

GO:

id name namespace
GO:0019427 acetyl-CoA biosynthetic process from acetate biological_process
GO:0003987 acetate-CoA ligase activity molecular_function
GO:0016208 AMP binding molecular_function

KEGG:

id description
K01895 ACSS1_2, acs; acetyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251197 lncRNA upstream 49450 18705908 ~ 18711967 (+) False LOC120547227
TU251198 lncRNA upstream 56183 18703965 ~ 18705234 (+) True G185471
XR_005636898.1 lncRNA upstream 71384 18666640 ~ 18690033 (+) True LOC120546607
TU251128 lncRNA upstream 116263 18643419 ~ 18645154 (+) True G185415
TU251127 lncRNA upstream 121036 18639092 ~ 18640381 (+) False G185414
TU251241 lncRNA downstream 39982 18819084 ~ 18821146 (+) True G185495
TU251367 lncRNA downstream 235624 19014726 ~ 19019533 (+) True G185589
TU251368 lncRNA downstream 243594 19022696 ~ 19023030 (+) True G185590
TU251369 lncRNA downstream 245162 19024264 ~ 19024578 (+) True G185591
TU251370 lncRNA downstream 264122 19043224 ~ 19043548 (+) True G185592
XM_039782905.1 mRNA upstream 529 18754893 ~ 18760888 (+) True LOC120547336
XM_039780896.1 mRNA upstream 23726 18733328 ~ 18737691 (+) True eif2b2
XM_039782206.1 mRNA upstream 38431 18717023 ~ 18722986 (+) True tmed10
XM_039782718.1 mRNA upstream 49423 18705856 ~ 18711994 (+) True LOC120547227
XM_039781662.1 mRNA upstream 63313 18695655 ~ 18698104 (+) True fosab
XM_039780959.1 mRNA downstream 19155 18798257 ~ 18813714 (+) True LOC120546186
XM_039780964.1 mRNA downstream 35507 18814609 ~ 18818443 (+) True LOC120546190
XM_039780966.1 mRNA downstream 35675 18814777 ~ 18818443 (+) False LOC120546190
XM_039780965.1 mRNA downstream 35690 18814792 ~ 18818443 (+) False LOC120546190
XM_039780967.1 mRNA downstream 35720 18814822 ~ 18818443 (+) False LOC120546190
XR_005637008.1 other upstream 706491 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 709346 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 844169 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 1075019 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 1088531 17669172 ~ 17672886 (+) False G185145
unassigned_transcript_1081 other downstream 153214 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 425052 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 650493 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 650493 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 650494 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile