RNA id: XM_039780964.1


Basic Information

Item Value
RNA id XM_039780964.1
length 1770
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC120546190
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18814609 ~ 18818443 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCATTGACCGTTTTCCTCATCATCAGTGCTGATATGGAAATAGTAGCTTATAAATATTTGTCAGTTTCTTAAAGCAAGTTCAGACGTCTGCAAACAATGCCTGGCATTCGGATtcatgcatatacagtatgcagCCCTCCAGAACACAAGGTGGCACTAATGACTTAATTTAGTGTCTTTGCAAACTGAAACACGCATGCGCAGAACAAAAACCAAAAAGACGAGTTCTGcacttcttatatactgtctatggttctgCAGAAGTTTGGCCCATAGTATCAGAGAATATCTAAACCAGCTTAACACAGGTGATCATCCGACTGGGCACTTACCTGTTCTCCTCCATTTGCTGTCAGTTCAGATGGAACTGCAGCTTCCACCTCATGAGGGAGAGGAGCTCTCAGTGGTTGACATGCACACAGGTGGAGAACCTTTACGGATCATCCACAGCGGCTACCCAGAGGTCAAAGGTGACAGTGTGCTGTCCAAACGTCGTTATGTCCGGGAACATCTGGATCACCTCAGGAGGGTGCTGATGTACGAGCCGCGGGGACACTACGACATGTACGGAGCCCTGATTGTGGACAGCGAGGTACCTGAGGCGGATCTGGGGGTGCTGTTCATGCACAACGAGGGGTACAGCACCATGTGTGGCCACGCAGTCATCGCACTGGGGCGCTTCGCTGTGGACTACAAACTGGTGAAAGAACCACAGTCACCAGAGACCCAAGTGAACATCCACTGTCCCTGTGGTCTGGTGAAGGCGTTTGTCGAGTACTCTGATGGTAAAACAGGAGGAGTGAGGTTTCTCAGCGTGCCAGCGTTTGCATTTGCTACAGATGTGAAGGTGACGGTGGAAAGGTTTGGTGAAGTGACTGTTGACATCAGCTATGGAGGAGCCTTCTACGCCTTTGTAGACGCCCAGAGGTTTGGCCTCGATGTGACCAAGTCCAGGACCCGAGATCTGGTAGATGCAGCCACAGCAGTGACCAATGCTGTCAAATGTCAGGTGAAGTTGCACCACCCAACCAGTGATGATCTGGCCTTCCTCTACGGCACCATCCTCACAGATGGCAAAGATAATTACTCCTCCGATCCCACCGCCaatatctgtgtgtttgctgaAGCACAGGTGGACCGGAGCCCCACTGGTTCTGGTGTTACAGCCCGAGTGGCTCTCCAGTATCACAAAGGTCTCATCCAGCTGAACCAGACCAGGACGTTTCAGAGTGGAGCCACTGAGTCCCAGTTCACAGGGAAAGCTGTTGAGGTACCAGTTTTCTTCAGTGCCCGTGTGCGCCCCTCTGCCCTAAGTCACTCTGGAGACAAAGTGTGGAGACTTCAAGGCTGTCGTGGTGGAAGTTGCCGGCAGAGCTTTTTACACCGGAGTTTCACGCTTTGTGCAGGAGCCAGATGACAAGCTGACTCATGGTTTTCTCCTGAAGTGAGCCTCAATTACAGGTTGTGGTATTAAATATGGTTGTACAtaaaaagtactttaaacaTTAGTTAAAAAGTTGCGTTTATAGCTTAAAAAACTATAGAAAATCCCTATGCTCTCCAAGAAGAGTATTGGATATGTAATAAACTTTGTTAAAGAGATTGTATCAACATTTTCTGTTggttttcctttgtaattatggcCTGTGCCCAACCACTGACTCATAAGGTTAGAAACAAGACAAATGTACGCTGCCTGTGACTTTTCCTTTGCAACGCGATGACCTCAGTCGTattacattaataaatgtaCGTACTATTTTGTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0018112 proline racemase activity molecular_function

KEGG:

id description
K18384 L3HYPDH; trans-L-3-hydroxyproline dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251197 lncRNA upstream 102642 18705908 ~ 18711967 (+) False LOC120547227
TU251198 lncRNA upstream 109375 18703965 ~ 18705234 (+) True G185471
XR_005636898.1 lncRNA upstream 124576 18666640 ~ 18690033 (+) True LOC120546607
TU251128 lncRNA upstream 169455 18643419 ~ 18645154 (+) True G185415
TU251127 lncRNA upstream 174228 18639092 ~ 18640381 (+) False G185414
TU251241 lncRNA downstream 641 18819084 ~ 18821146 (+) True G185495
TU251367 lncRNA downstream 196283 19014726 ~ 19019533 (+) True G185589
TU251368 lncRNA downstream 204253 19022696 ~ 19023030 (+) True G185590
TU251369 lncRNA downstream 205821 19024264 ~ 19024578 (+) True G185591
TU251370 lncRNA downstream 224781 19043224 ~ 19043548 (+) True G185592
XM_039780959.1 mRNA upstream 895 18798257 ~ 18813714 (+) True LOC120546186
XM_039780960.1 mRNA upstream 35507 18761417 ~ 18779102 (+) True LOC120546187
XM_039780961.1 mRNA upstream 35507 18761417 ~ 18779102 (+) False LOC120546187
XM_039782905.1 mRNA upstream 53721 18754893 ~ 18760888 (+) True LOC120547336
XM_039780896.1 mRNA upstream 76918 18733328 ~ 18737691 (+) True eif2b2
XM_039781175.1 mRNA downstream 129877 18948320 ~ 18958802 (+) True gata4
XM_039781177.1 mRNA downstream 147763 18966206 ~ 18977451 (+) False fdft1
XM_039781176.1 mRNA downstream 150481 18968924 ~ 18977451 (+) True fdft1
XM_039781178.1 mRNA downstream 159387 18977830 ~ 18981178 (+) True ctsbb
XM_039781179.1 mRNA downstream 163734 18982177 ~ 18989774 (+) True LOC120546316
XR_005637008.1 other upstream 759683 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 762538 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 897361 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 1128211 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 1141723 17669172 ~ 17672886 (+) False G185145
unassigned_transcript_1081 other downstream 113873 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 385711 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 611152 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 611152 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 611153 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile