RNA id: XM_039780969.1


Basic Information

Item Value
RNA id XM_039780969.1
length 3550
RNA type mRNA
GC content 0.47
exon number 3
gene id vrtn
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15296281 ~ 15300707 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCCACTGCTCAGCCGCCGCAGGTCCGAGGACAGAACTCTCTGGAGCTGCACGCACGCAATGGACTAAAactcccagagagagagagagagagagagagagagagatagagagagagagagagagatcaacaCGATCAGCTGTGAAACCCCTCCACTACAAACAAGCGATTTCCATTGAGTCTCTTTTTGTAGTCTCTGGACGTTCAGtTCTCGTCAGATCCCCAGGTATGATTCAGAGGAAGGAGGTGGTGTTGTCTGTTCTGGGGGAGCTCCAGGAGGCCACAGAGAGCTCCGGCCTGGACGCTCTGACCCGAGTGGCCCTGGAGGTGGACCAGATCCTTGCTCCCTTCCAGCTCCCGGAGACCCCCTGTCAGGATTTTCCCGAGTGGGCAGGCGTGGATAACTCGGCTCATGGCCTGTACCCACCCGATGCACCCATGGGCCTCCTGCCTTTAAACTGTAAGGGGGAGGGCAACCGGCTGTTTGACGCAGTAAGCATGCTGTTAGTGGGCAACACTGGACTTAGCTTGGAGCTACAGGTCCGGACAGTAGTGGAAATGGTGCTGTGGAAGAGATACTACCTTTCTGGAATGATCGATTCAAAAATTATGCTTCAGGCTGTTCGCTTCAGCCTCTGTGCCGAAGAGTCTGAGGACATGCTCAACCTGCCTGTAACAGTCCTGGAGGCCATCTTCGACGCCGACGTCAAAGCGTCCTGCTTCCCCGGCTCCTATGCCAACATGTGGCACGTGTATGCGCTTTCGTCAGTCTTACAGTTTAACATCTACTCCATCTATCCCAAGTTCAACCTTAAGATCCGGCCCTATTTCAACCGTGTCATACGTCCAAGGCCGTGGCCTAAAGACTGTGAGCCGCTAACCCTCCACATCATGTGGTCTGGAGAGCTGCAGTCTGAGTCGTTGTTCAGGCCGAACCACTTTGTGGCACTAGTCCAAACAAGAGACCTCACGTTTGGAAGCCCTGACAGCCAGCAGAGGGTGTCGCCGACGAAGAGCGAGGACCTGCTGAACCGGGACCTGCAGCTTTCCTACCCGGGTCTAAAGGACAAGTACAACATCACCAAGAGGACCTTCTACCGCTGGAAGAGGCAGACGCAGGAGCACTGCAAAAAGTCAGCAGCCAGGTACGAGGCAAAGTATTTCCTGCAGGCCTGCTACTTGGAGGGCAAGCTCATCCCTCTGCACCAGTTTAAAGAGTTTTTCCCTGAGATCTCAAGGTCGTCGTACTACAACTGGAAGCAAGAGCTCCTGAAAACCGGAGGAAACTTCTCCACCTCATCATCCGCTGGAGAGATTAGTCCCGGAGAGAGCACGGAACAGGAGACCTGGTCTTCGCCTGAAGCGAAGCAGTTTGAGCCAGACCATAATGACAGTGTGGCGAGCATGTTTGGCCTCAACCTCGGCAAGCTGGACCTGGAGCGGGCCCAGACTGTAGCTCACATGCAGGAAGCTAAGCGCTGTCTGCAAAATTGCATCGCCATGAACGCCTCCCTCCCCTTCAGGATCTTCAAAAGAAATTTCCCAGGGATCTCCAGATCAACCTACTACAACTGGAGGAGAGAAGCCATGCTGTTCAACGGCGGTTACAAAGGCAGCGTTGGCAGCAGTGAGGACAGCTCAGATGCTGACAAGAGCCATAGTCCAAAAAGTCTGTCCCCAGTCCTGCATCACACCAACCAGCTGTTCGCGCCCAGAAGGAGAATCTgtggacaaaaacacaaaagtttCATGCTGGCGTACATCAGTAAAAAACAGCTCAGAGATGTTGCAAAGCTACATGTCCAGAAGTTCAATTGGTCCCTGACGAAGTTCAAGCTCAAGTTCCCAACCATGTCCGCTTCTTTCTTCTGGCTTTGGCGTAGCAGTCGAAACCGCAAGAAGAAGATCGGCATGCAGAGCACAGAGCTCAACCTTCCTGAGAGTCTGGAGAGCACTGCTCCAGAAAACAAGATTATGGAGCGGAGGATGGATAGTCAGCATGTGCTCCCATTTGTTGAGAGTCCTAAACCTCTAGAAAGCTCCCCCATGCCCCCGTTTCATGCCCCACATCCAAAGCACATCATTCACAGCAAGGCGCCCGTAGATGAGCAGATGTTCGCGATGGATGTTGTGGCTCTGGCCAACTTCAAGGCCAAGGCCAAGCTCTTCCTGCAGCAACGCTTTGAGGAGAAATCCTTCCCCACGTTTAAAGAATTCAGGTCTTACTTCCCTTTCACGCCACGCTCAACGTACTACATGTGGAAGCGAGCTTTGCATCATGGGGTGTCGCTGGTTCATGGGTAAATGCCCAACgcttttatctaaaaaaaatggGCTTTTAGGAGCGACATGAAAGCTCTGTTGAAGAACTTCTTGACCCCAAAAACCTCCCATGCATCTCTCCGCCGGTGCATTTTACTGTGAACATACTACACAAGTTTACTTTATGTTCTAAAAGACTGTTAAGTGCACCGGCTTAGCATCTAAATGCATTGTGTCCTTCGTCTGCCCCACCACCACAGCTCATTCCTCCCTCCTGGACATTTGCACGTGTGTGAAAAGAAACCGAGTTGTGGGTCAGTTTAGACCCTGCATGTTTCCCTCCAGGCAAAAGGCAGTTCAAAGCTGTTTAGTGGCATTTTGTTTGAAGCTGTTTCTCCTCCATTCTCCTTTAATCCTTGCTAAGCATTGTACTCAGggtcctttttatttttcagttttcattGTAGTAAGTTTGTTAATGCTTAAAagtattatttttgttgttgttgatgcttGTGATATTGATCTGGGAGATTCCTAGtggtttcatatttttttttatacttaaaatgtaaaaaaaagccaGTATTTGTTTTCAGAGATGAGTTTACTCCTTCTTGTTCAATCTTCTGTAAACAGGGGTTCAGTCTTTTTTCATTGTTCTACTTTTGATTATTGAATGTACACATTTTGTGCACCAAAGTTTTAGGTGGTTATCTCAaggttttggctttttttttgatgacctacttttaaaatgcctctTTAACTTTTGGTGATGCACAATATATAAACTGAGTTTTGTCACACTTACACTGTATTTGCACTGAAATAGTTCCCATGACACTGTTGAATGTATTGTCTTAACCATCATGCACACTTTGGTTAAGTTGGAATTTTCCAACAATTctgttttagaaaaaaaaaatgtttacatggTTTCTTTACTTGAAAACTGAATAtaaatgaagattttttttattttttgtacgaTCCTTCATTCCAAACTACCTATTTTCTTGCAACATTGGGGAATATTTGCCTTTTATAAGCTTTGTTTGTCTGCTGTTCTTCACTAAATGAAGTTCCACTTCCAGTTCTCTCCACACAGACAAACTTGTTTTGCACAACTTCCACTGTAATAACCctaaataatacatttcagTTTACTTTGTACTTATGACATGTCTGGAATGGGTACTGTTGATACTGGcagctttgttttgtagtcaGTCAGTAGGTAAGGAAATCTGTGCTGTATATTAATAAACCATCAACCATCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637012.1 lncRNA upstream 31564 15257133 ~ 15264717 (+) True LOC120547009
TU249768 lncRNA upstream 93766 15202306 ~ 15202515 (+) True G184431
TU249755 lncRNA upstream 122151 15173690 ~ 15174130 (+) True G184419
TU249709 lncRNA upstream 164510 15129476 ~ 15131771 (+) False hsp90aa1.1
TU249711 lncRNA upstream 184676 15110243 ~ 15111605 (+) True G184389
TU249801 lncRNA downstream 19311 15320018 ~ 15320239 (+) True G184461
TU249803 lncRNA downstream 21039 15321746 ~ 15322122 (+) True G184463
TU249805 lncRNA downstream 21868 15322575 ~ 15322888 (+) True G184465
TU249814 lncRNA downstream 177784 15478491 ~ 15479080 (+) True G184474
TU249823 lncRNA downstream 192497 15493204 ~ 15493527 (+) True G184481
XM_039780985.1 mRNA upstream 3029 15289674 ~ 15293252 (+) True LOC120546207
XM_039782031.1 mRNA upstream 9430 15277585 ~ 15286851 (+) True slc25a29
XM_039782032.1 mRNA upstream 9430 15283546 ~ 15286851 (+) False slc25a29
XM_039782230.1 mRNA upstream 122699 15142703 ~ 15173582 (+) True ppp2r5cb
XM_039782510.1 mRNA downstream 287376 15588083 ~ 15597893 (+) True dll4
XM_039782709.1 mRNA downstream 301628 15602335 ~ 15604166 (+) True chac1
XM_039782916.1 mRNA downstream 359963 15660670 ~ 15663661 (+) False rhov
XM_039781221.1 mRNA downstream 379754 15680461 ~ 15687727 (+) True zfyve1
XM_039781224.1 mRNA downstream 394237 15694944 ~ 15719632 (+) True dpf3
XR_005636833.1 other upstream 3029 15289674 ~ 15293252 (+) False LOC120546207
TU249525 other upstream 766911 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 915094 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 1174767 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 2048865 13206308 ~ 13247416 (+) False G183994
TU249798 other downstream 1218 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 359866 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 394237 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 394237 15694944 ~ 15716284 (+) False dpf3
TU249895 other downstream 613938 15914645 ~ 15968123 (+) False LOC120546249

Expression Profile