RNA id: XM_039781012.1


Basic Information

Item Value
RNA id XM_039781012.1
length 1788
RNA type mRNA
GC content 0.48
exon number 9
gene id mtfr2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17378182 ~ 17391719 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaggtttagctgctgcagctttaTTTGACTTAACAGACTTGCCTGCTACCTGGACGAGTGAGCTCGGAGGAAAGCTGTACGTTATTAGTGTTTATCTGCAGTTACAGTTTATATCATCGGTTATTGTGAAGATATCGGACAAATGTAGCTACAAGGAAACGTTTTAGCAAGAAAAGTCCACGGAAGCCAGAGTACAGCTCTGAGAACTGGACTGATGTGGTCTCGgtGTAAAGTATGTGACTTAGTGGCATCCATTCTGTGTTGGCCTCTTACCAAGTTAGTAGTCAGCAGAAAGAGGAGCTTTGCAGTCATCAGCTGGTGCAGAAAAAAGTCCTTCCAATGTCTTTAGTCGAGGATATTCTGGATGTGCTGCGCGTTGTCCTGGAGTACTTTGGCGTGCCTCCACACATGCTGGTTCCAGTTTGGGACAGTCAGCTGTGCGGCCAGTATCGCAGCATTGTGCGGATGATTGGGACCAACCTCCCACTGACACCTACACCACGCGTCCACTTTCAGATCCCTCTGCTCACTGACAGGCCACACGGCCGTGTGGACATCACTACGGATACACCTGCCATCCCTTCGTTTGCTGATGTCCTGTGGGTGTTTGAGGATGAGGGGGAGAGCTTCGCCAAGACCAGGAACCATTTACCTCCAAAGAAGCAAAGCACCGTAAATCGGGATGTGGTGAGATACCCAGGGCCGGCCCAGAATAACGCACAGAGAGGAGGCAGATCTGCGAGGCAGAGAACTGAGCCAGATGCCCTGAAGAAGATCACAGCGCTGGAGAACGAGCTGCTCAAACTACAAGCTCAGATAGCCATGATCGTTACTGCCGCTCCAGCCTCAGGTCTGACAGATTCCCAGAATACTGTAGGTATGCTTTTGATGTCTCCTCCCCCACGGCCAGCTCTCACCTCCACACCTCGCTgtgctcctcctccacctcctcctcctccctgcccTGGCTCCTCCGCTAAGACTTCGTCTCTATTAGAGCTGATCCGCGAGCGCAGGAAGAACGACAAACACCTTGACAATGGTCAGCTCAAACCCCAGGATTCAGACGTTAAAGGGATCCCGTCCATGCTGGATGTTCTCAAGAACTTAAATCAAGTTAAATTGCGTTCAGTGGCAAGATCCCCAGGGGGGACACCAGTCGGAAGGAGACACAGTAAGGGAGGCGCAGCATTGCTTAATGACCCAGCGGCTCTTATCGCTGAGGCGCTAAAGCGAAAGTTCGCCCAGCATCGTCACAACAACTCCTCCGACAAAGAGAACTCACTAGAACTCTCGCCGTTTGGCAGTCCAGAAACACCCAAGGTTCCTCTCCATGTCAGACGCAGTAAGGGGCGCCTCCACGTCTGACCTCTTTGATCTgaccccaaaatgtcaaaagtcaGACATCCCATCAGCCAATTACAGCACTCACGGATGTGCCTCACAAACGGATTAGTACTGCAGCTACTgtcttacatttcatttttatttttgtttgtctgttctttTGTTCTTGTAGGAGTGTTTGTCTCACAATGAACAAAGTGCTTGTTTCTGTTACGTATCTCTTCGTTGGGAGGCTTGAATGTATATTTGTGTTACAGTGATTGCTGTGAAGGGTTTTGGTAcagatattttgtttttgtacagtGGAGTCTTGTTTCCAGTGTTAATCATTTATCGATGATCTTTTTAAATGCAATAATGTGTTAAAGCGGGCATGCACTGAAGCTTTTAGCTACCTGTTTAATGTCTTTTTAGGTAAgacttaaataaatataaaactaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250541 lncRNA upstream 79545 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA upstream 86690 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA upstream 87409 17288851 ~ 17291556 (+) False G184995
TU250480 lncRNA upstream 422101 16933696 ~ 16956864 (+) True G184948
TU250341 lncRNA upstream 652573 16724877 ~ 16726392 (+) True G184851
TU250579 lncRNA downstream 1815 17393534 ~ 17397048 (+) True G185022
XR_005636901.1 lncRNA downstream 38301 17430020 ~ 17447803 (+) True LOC120546618
TU250569 lncRNA downstream 46970 17438689 ~ 17440600 (+) True G185015
TU250565 lncRNA downstream 49422 17441141 ~ 17447316 (+) False LOC120546618
XR_005636900.1 lncRNA downstream 50710 17442429 ~ 17447803 (+) False LOC120546618
XM_039781338.1 mRNA upstream 3906 17351191 ~ 17375059 (+) True map7b
XM_039781016.1 mRNA upstream 47598 17312474 ~ 17331367 (+) True ppp1r14c
XM_039781403.1 mRNA upstream 244549 16965466 ~ 17134416 (+) True nbas
XM_039781404.1 mRNA upstream 244549 16965466 ~ 17134416 (+) False nbas
XM_039782388.1 mRNA upstream 498630 16876322 ~ 16880335 (+) False fam228a
XM_039781679.1 mRNA downstream 16055 17407774 ~ 17430002 (+) False LOC120546616
XM_039781678.1 mRNA downstream 24204 17415923 ~ 17430002 (+) True LOC120546616
XM_039781169.1 mRNA downstream 88479 17480198 ~ 17485596 (+) False hbs1l
XM_039781168.1 mRNA downstream 88493 17480212 ~ 17504874 (+) True hbs1l
XM_039781170.1 mRNA downstream 115235 17506954 ~ 17515583 (+) True aldh8a1
TU250558 other upstream 12988 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 12988 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 83264 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 545651 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 602364 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 277453 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 290839 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 525134 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 629244 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 629244 18020963 ~ 18052071 (+) False fndc4a

Expression Profile