RNA id: XM_039781016.1


Basic Information

Item Value
RNA id XM_039781016.1
length 1095
RNA type mRNA
GC content 0.46
exon number 4
gene id ppp1r14c
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17312474 ~ 17331367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTTTAAAAGCTCCTCGCCATCCTCCTGTCTGCTGTGCAGCTCGCAGTCTCACTCAGCACAGCAGTACCCCACTCTTTCACACACTTCTTAAATCATAAGCCCTCGCATCCCGCAATGTCGGCCGCCAGCACAGAGACTAGCGCCCCGCTGCCCACCGCCGGCAGCCGCGTCTTCTTCCAAGGTGCGCCCGGAGTTGGCTGCGTGGGGTCCGGCCCCATCACCGGGGACGACCCGGTCCAGAAGAAACAGGGCAAAGTGACGGTCAAGTACGACAGGAAAGAGCTGCGGAAAAGACTCGTCCTGGAGGAGTGGATCATCGAGCAGCTCAGCGAGTTGTATGACTGTGAGgAGGAAGAGATGCCAGAGGTAGAGATAGACATAGATGATCTGTTGGAGGTCAACAGTGACGACGAGAGAGCCAGCAAACTGCAGGAATCATTAATAGACTGCTACAAACCAACAGAGGTCTTTGTCCGCGAGTTGCTGGGCAGGATAAGGGGAATGAGAAAACTCAGTGCGCCAACTAAGAAGGGCCTATAATGGCTTTGATTTCAACTATCAATCAACCATAAACTCATCTCAGCTCCACCTACTTAACCCACTCAACCTGGACTGTCATCACACAGAAAAACGTATCTAAACATAACAGCATTACTAACTATCCTGCAACTTGCAAACAGGCACCATAAACTCCATGCATATAGCACTAGCCATTCATTTCACAATCACGTAGAATAACAAGGTGTATTATAATATTTGTCTGTTGAAAGGTACGTAAGCAAAACAGAGCCAACATGGTTAAATAGCATTACAGCCACAATAAAATGTCATGCCCTGGAACGTGCCAGAACTGCAACTGTGCTTTAACACGAATACCACCTTATTCCACATTTCAGAGCCATGTTACAATCTGATGCTGTAATCCCAACAGGCATATAGCATAAACACAGAGGtggtaaaaaaatgtttgtactGCAGTAGGTGTGAAATTAGCTGAAGCACTATGTAAACATGGTGCTTCAtggttttgtcatttttttactgAGGTATTTTGCTGTTacttcttttaaataaaatgtactgtatgttgcca

Function

GO:

id name namespace
GO:0042325 regulation of phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17556 PPP1R14C, KEPI; protein phosphatase 1 regulatory subunit 14C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250541 lncRNA upstream 13054 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA upstream 20199 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA upstream 20918 17288851 ~ 17291556 (+) False G184995
TU250480 lncRNA upstream 355610 16933696 ~ 16956864 (+) True G184948
TU250341 lncRNA upstream 586082 16724877 ~ 16726392 (+) True G184851
TU250579 lncRNA downstream 62167 17393534 ~ 17397048 (+) True G185022
XR_005636901.1 lncRNA downstream 98653 17430020 ~ 17447803 (+) True LOC120546618
TU250569 lncRNA downstream 107322 17438689 ~ 17440600 (+) True G185015
TU250565 lncRNA downstream 109774 17441141 ~ 17447316 (+) False LOC120546618
XR_005636900.1 lncRNA downstream 111062 17442429 ~ 17447803 (+) False LOC120546618
XM_039781403.1 mRNA upstream 178058 16965466 ~ 17134416 (+) True nbas
XM_039781404.1 mRNA upstream 178058 16965466 ~ 17134416 (+) False nbas
XM_039782390.1 mRNA upstream 432139 16876319 ~ 16880335 (+) True fam228a
XM_039782392.1 mRNA upstream 432139 16876320 ~ 16880335 (+) False fam228a
XM_039782391.1 mRNA upstream 432139 16876321 ~ 16880335 (+) False fam228a
XM_039781338.1 mRNA downstream 19824 17351191 ~ 17375059 (+) True map7b
XM_039781013.1 mRNA downstream 46815 17378182 ~ 17391719 (+) False mtfr2
XM_039781012.1 mRNA downstream 47598 17378965 ~ 17391719 (+) True mtfr2
XM_039781011.1 mRNA downstream 47598 17378965 ~ 17391719 (+) False mtfr2
XM_039781679.1 mRNA downstream 76407 17407774 ~ 17430002 (+) False LOC120546616
TU250543 other upstream 16773 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 479160 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 535873 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250012 other upstream 910371 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 1344351 15914645 ~ 15968123 (+) False LOC120546249
TU250558 other downstream 10470 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 10470 17341837 ~ 17365977 (+) False map7b
TU250758 other downstream 337805 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 351191 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 585486 17916853 ~ 17917248 (+) True G185237

Expression Profile