RNA id: XM_039781070.1


Basic Information

Item Value
RNA id XM_039781070.1
length 5140
RNA type mRNA
GC content 0.44
exon number 12
gene id itpkb
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15986083 ~ 16014859 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCGCAGACAAACAGCGCTTTACTACGAACACCGAGGTGTCGAGCTGCACGCGTGACAACAGAAACCTCCCAAGAAAACTATGTATCCTGAGCGCAAACTGTGAGAGGACTCCGCTGGTCGGTACGAGATGCTTTAAAGTTCTCCTGAAATaaccacagagacaaagacatttTGAAATATACTTCTTTTGCTGTGGAGGAGGAtgttttggtaaaaaaaaaaaaaaaaaaaggcgaagAGCGAGAAAGGACCGGCGGCAGCGTCGAACAAGTTCGTTTATGGAAGAAACCAATAACGCAACACAAGAGGAGCAGATgagaagttgttttggtgcacAAGGAGCCGTAtctttgtatgtgttgtgttccaagtgtcagacacacagacagagaagagTCATCCTCGGCTTGTTGGTATCTGGCTGTAACATTACTCAGACCAATAAAAGTGTCTCGGAGAAGCCTTGGAGAGGACGGTGCAGCGCTGAGATTTTCTCGTAGTGTGGAGCTGCAGCTGCTGACTGAAtgcagaggaaacactgaaagcTGTTCTCCAGGCCTCCCTGCAGCTTCAGGGGAGATTGTCAGATGTGTACCCAGCACTCAAAGCCCCTGGTCTGGCCACGGGGATGGCAGCCTCTGCCCTGAACCTGAATGGCCTTGGAGTCATGAACAGTAATCAGTTTCACACTCAACCAGGCTCCTCTAGTACCACCTCTCGAACTAGAACCAGTCCGGTCGGTCGACCTGTGCTGCCAGTTCCAGATCGGGGCACCTACTGTCAGTTACTGGGCGGGGGAACGCCGGGTGGAAGTATCTACAGCCCAACCAGCCCTAAGACGAGCCCTCGAACTCTGGGTCCAGCCTTTGTCTTCCCTCCTTCATCCTCCCTTTCCCCCAGCCCCACCCCTCGTGCTCGCTCCCCCTCCCCGCGAAGCCCGGAGCTCCTAGGAGTTAATGTGGGCCAGCGGGTCCGACGACTGAGCTCGCCCGGCgctgaggagagaggggaaggaGAAGGGCAGGAGGAGAGGGTAGGAGAgacgggaggaggagagaggcgaGAGGAAAGGAGACGCCAGGCACAGCTGCTGCAGATACACAGAGAGCTGCAGAACGTTGAGGTCAGGGGAAAAGTGGGCATTTTCGAGGCCCACATTTCCGGAATTCGTGCCCAAGTGCTAAACACTGAGCTCCAGCGCAGCCCTCGATCTCCAAGACGATCGACTAGCCAAACCCCTTCCCATCCCAGCCAGCAAAACACAGCCCTTGAATGCCCAATGACCCACCCGCAAGAGAGTAAAGTTACCTCTGTTGTCCAAAATGGAAGAGAAAGGGAGGAAGACACAATggaaggagaaaggagagaaggaggaagtAAAGATGATGAGAAGGACAACAGTGCTACTAAAACCAACACTGAAAACAAGACACTGATTggtcaaaatggccgccattcAGAAACAACAATGCAAACTTCCTTAGTAGACGGAGCGTTTGTCGTTCCAGGTTCCCTTGAGACATTAAACCCAGATGcaacaacagacagagagaaaaaagaaggagaaaaagacagaggggAGGTAGAGAACACACAAATGTCGGGAGACGAAagagaacagacagagagagaagtgagAGATGAGAAAGAGGACCGGTCATGTCTTGAGATGCTGCTTCAGACAGAGACTAACAGGTTGGAGGTTAACCCAGAAACAAATGCTTTTCCTCGGGCGCAAAGCAGTGAGAGAACCCCTTGTTTGCTGGACACCGATCACACCTCCAACcactctccctccatccctgcAGTCATAATAACTGACCACGGTTTGGAAAGCCAGCCGCAAAATTATTCTGAAGGCCCTGGCTCAGACCAGGGACTAGGTTGCACCTCAAGCCCCAGTTCTAGCCCTGCGTTTGGGACAAACTCCTCCACCCGCTCCCTCAGGAAGCTGTCgtcctcctctgcctcctcgGCCGGTTTCTCCTCGTCTTGGGAAGAGTCGGAAGAGGATATTTCTAGTGATacagagaaaggagagcagCTTCTCAACCCTGCAGTCCTCACTTCTCAACAGAGAGCAcacAAGTCTTGGAAGAAGATTAAGAACATGGTCCACTGGTCACCGTTTGTCATGTCCTTCAAGAAGAAATATCCCTGGATACAACTGGCTGGGCATGCAGGAAGCTTCAAGGCGGGAGCAAACGGCCGTATATTAAAAAAACACTGTGAATGTGAGCAGCGCTGTTTGTCCCTCCTGATGAGGGACGTACTGCGCCCGTACGTCCCTGGTTACCATGGTGACGTAGAGAAGGACGGACAGAAATACAACCAGATGGAGGATCTGCTGGCTGAGTTTGACTTCCCGTGTGTGATGGACTGTAAGATGGGAGTGAGGACCTACCTTGAGGAAGAGCTGACCAAGGCTCGTAAGAAACCCTCCCCGAGACCCGACATGTATCAGAAAATGGTTGAGGTGGATCCCGAGGCGGCTACGCCAGAGGAAAATCTCCAGAAAGCTGTGACCAAACCCAGATACATGCAGTGGAGAGAGACCATAAGCTCAACAGCCACCCTGGGATTCAGGATAGAGGGAGTCAAGAAGGAGGACGGGACAGTGAACAGAGATTTTAAGAAAACAAAGACGAGAGAGCAAGTCACTGAGGCCTTCCATGACTTTGTCAAAGGAAATAAGGACATTCTGaaCTGTTATCTAAGCAGGCTGAAAGAAGTAAGAGACACTCTGGAAATTTCCCCATTCTTCAAAACCCACGAGGTGATTGGCAGCTCCTTGTTGTTTGTTCACGACAGTAAGGGACGGGCCAAAGTCTGGATGATCGACTTTGGGAAAACTACGCCTCTTCCTGAAGGGGAAGAACTAACCCACCGAGCATCATGGCAAGAGGGCAATAGAGAGGATGGTTACCTTTCTGGACTTGATAGTTTGGTGGACATCATTTTATCAATGGTGAACTCTGAGACTTGAAGTCAGAgggtttttaaaaagaaatccaaTTGAACATTTGGACACACAACAACCACTTCCATtcattcttcctctctctcggGAACACTTTGGACTTCCTCAGGATTCCTTCACAGGCATTTGTCCTCATGCACCAAACCACATCATCACAAAACAATGCGTGGCCAAATCCATTCATGGATGCAGCCTTTCTATTCATATACAGTGGATTTCAATATCATGCTCTTTCCCATCCATAACCCTTTTGATACCCTCAAGGGCAGGCCATAATAGGCCTTTTTCAGAGCAAACGTTTTAACTTTAAATATGAAAGATAGCTCAGTTCCATTATGTCTCCCAGTAAGCCATCCCTGCAAGACAACCTTTTTACTAAAGAAATTACCCTTAAAGCAAAACAATGTAGATTGCCTATTCCAAATGTGAAGGCTAAGACTGATGatatgattatattttttttgttattgtaaacaaatcccccaaaaagaccaaaacaatcATGTGTTACAGTTTGTTTTTCTATATCTGCCCAGCTCTCAGCCCCAAGACCATTTGTgccagctgaagatgtgaacctttaaaaaaatcagGATTACACATAaatggtttcattttttttttttttttaagactaaataattttataaaacagctggacactgtagtttttagcaaacgtGTGGATTTTGAACATTTCTGACTTTGGGCGCTACCTGGtggtaatataaaaaaaatacactaatTGTCTAATTTTCTATATGATGCTATCCTAATTTGAAAGATGCTATAATCACATACACATTTAACAGgtaatggattttaaaactccCTTATTTGACATTAAATGTCTTGATTTGGGTACACCCCTGCTCTCATGACTTTTAAACAGTTATTCTCCTTTGTGTATCTGTTAGATGTATCCCCATTCAATCAGAGTTAGGTTGCATTTCTTCCTCAGCTTATCTGAACTCAGTTTTATTGAAGTTTTTTGTCTGTTTGATAAGTTTGACCACAACTTCAGCACATTGccgtttctttttaaaaaaacagtctGCACTTGATTACATTTCCGCTGTTAGAGATTGTACAGTTAAGTGTGTTttacagtgaaaaacaaaactagtcttttagctgtttttaactTCTGTTTAACCAGTCAACCTTTAGATACTGTAGGTTGGTCAGTGAGGTTTTCAGTGGCAGCCATGTTTGCTCCACAATAATCTGGCAATAACTGGCAATTATGTGGAGCTAAATTATACATCTCACAGTAGTTTCAGTATGTTATGGAGGGCATTGTTTCATATGTAACATATTTACAGTGGTAGTACTTCCCTGGCCAAACACTTCTCAACCTATTCACACTTTTGTTGGGATTGTTCACAATGTACAATGAGATTTCTTATGTTTGATGTAGTTTTTGTAACATTATTTTAGTGTACTCAAATCCTGTGGAACACTTACAGCCATGAACAATCTTATTTAAGCTATACAGTGCCTTGACATTACAAAGCCAAGTCagacaactgaaaatatgttcTTATTGTAAATGTTATGATGGACTTTGCTCCTAGTCTTAACTGTCAGTTTCTGTGTGCAGTCTTGGGTGCATGTTTATTATCCTCTTAAAGTTCGGGCTTAATTTGTAtttcattctgtttttatttataacattatattatgtgttttttttttagttaatgGGATACTGTGACATTTTTGTGACAACTTTGGGCTGTTATGTGGTTTTGTCTTCAAGCATGTGTTACAAGATGAGTGGAAGTCAAACTGTGGGGCACATCACTGACATTGTGGACATTATTCAAAAACTTGGATATGGCTAAAGAAAAGATTGATAATGTTCAGATAATGAGTCCCATTAACATGAATGGAGAATGCAAACATTCACTTTGAAAATGGTTGGGCAGGAGGGGAGTGAAAAATATGTCTCATAATGTAACAGGTTCTTGATGAACAATAAAATCTAAATAGTCCCATTAGTAATTTGTTCCACTCTACCACATATTTAAAATACCATGGTTTTCATTTGATGTTTGCAGTGACACTAGATGCAGAAAGGACTGATAATAATTCCATGCAGTGCCTTCTTAAAGatgtagtttgacattttggaaaataaaacgTATGCTTATTA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249901 lncRNA upstream 58421 15926071 ~ 15927662 (+) True G184540
TU249891 lncRNA upstream 64285 15914645 ~ 15921798 (+) True LOC120546249
TU249948 lncRNA downstream 30950 16045809 ~ 16047681 (+) True G184584
TU249994 lncRNA downstream 276352 16291211 ~ 16356548 (+) True G184618
TU249989 lncRNA downstream 318196 16333055 ~ 16391851 (+) False nkain2
TU250006 lncRNA downstream 364648 16379507 ~ 16381781 (+) False cenpw
TU250010 lncRNA downstream 386049 16400908 ~ 16404077 (+) True G184628
XM_039781050.1 mRNA upstream 108334 15853810 ~ 15877749 (+) True tmem200a
XM_039781271.1 mRNA upstream 209866 15772660 ~ 15776217 (+) True ccn2a
XM_039782619.1 mRNA upstream 247103 15730047 ~ 15738980 (+) True stx7l
XM_039781225.1 mRNA upstream 266451 15694944 ~ 15719632 (+) False dpf3
XM_039781072.1 mRNA downstream 2116 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA downstream 10301 16025160 ~ 16042239 (+) False coq8aa
XM_039781210.1 mRNA downstream 94493 16109352 ~ 16126914 (+) True med23
XM_039781211.1 mRNA downstream 94493 16109352 ~ 16126914 (+) False med23
XM_039782626.1 mRNA downstream 233235 16248094 ~ 16335415 (+) True nkain2
TU249895 other upstream 17960 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 269799 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 269799 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 322509 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 667247 15301925 ~ 15318836 (+) True G184458
TU250012 other downstream 384579 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 750686 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 810835 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 1278795 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 1326978 17341837 ~ 17365977 (+) False map7b

Expression Profile