RNA id: XM_039781107.1


Basic Information

Item Value
RNA id XM_039781107.1
length 1086
RNA type mRNA
GC content 0.49
exon number 2
gene id tcf21
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17652502 ~ 17654361 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCTCTCTAGCCATGGAGATAAAAGTCTGTTCCTATCTGCTCTGTTCACGCACAGTTAGCAGTTGATGACCACATGCGTTTGACCGCACTGTTCATTCGTGTCCAGCCTCAGCTTCCTGCTCCCATGTTTTGAGCCTGCGCCAGTTGGAGACAGTTCACCATGTCCACCGGGTCTCTCAGCGATGTCGACGACGAGCTCCTGGACGGCATCCTGAAGTTTGGCTCCTCCGGTAAAGACTCCAACGAGAGCACGGAGGAGAGCTCCAACTGCGAGGGCACTTGCGCAAACGACGCGCCGGGCAAGAAACGGAAGACAGCGTCCAGGAAAACGGCACCCAAGGGTGTGGCACAGCAGGAGGGCAAGCATGTGCAGAGAAACGCGGCCAACGCCCGGGAGAGAGCCAGGATGCGCGTCTTGTCCAAAGCCTTCTCCCGGCTGAAGACCACCTTACCCTGGGTACCAGCGGACACCAAGCTCTCCAAACTGGACACACTGCGCCTGGCGTCCAGCTACATCGCGCACCTCCGGCAGATACTGGCCAACGACAAATATGAAAACGGATATATCCACCCCGTTAACCTGACTTGGCCTTTCATGGTTGCAGGCAAGCCGGAGAACGAGTTGAAGGAGATGCTGAACACAACCCGGTTATGTGGAACAACGGCATCATGACGAAACCAAGCGGACACCTTTGTATGTTTTCAAAGGAAATAAGATATCCcaagacaatttaaaaaaaaagattgtgacTGAAATGCACGTCTCATCTCCGCAGACTTTGAGTGGGAATaacggagagaaagagagagagagagagagagagagagagagcatcccCTCTCCTTCGTTCCCGTAAAGAaaagtttaattttatttaaatgcattTCTGTCACCTATCTTTGTCTTTGCTGGTTCAAAGATAAATTGCTTGTTTGTGctttaaattgctttttttttaatactctgCAGATGCATTTTTACTCATGCAAGCCTGTTTTGGCGGCTGCATTATGATGGATGGATTTGTCCACTGTCTCAAATGGTTGTACAGatttgtatataaaatatatttgtatcACTTTTA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250710 lncRNA upstream 98593 17553442 ~ 17553909 (+) True G185112
TU250704 lncRNA upstream 101397 17550558 ~ 17551105 (+) True G185107
TU250700 lncRNA upstream 104213 17535854 ~ 17548289 (+) True G185103
TU250659 lncRNA upstream 182927 17468552 ~ 17469575 (+) True G185067
TU250650 lncRNA upstream 199440 17451766 ~ 17453062 (+) False LOC120546214
XR_005637003.1 lncRNA downstream 14805 17669166 ~ 17671477 (+) True LOC120546942
TU250765 lncRNA downstream 22364 17676725 ~ 17693634 (+) False LOC120546940
TU250756 lncRNA downstream 26104 17680465 ~ 17686398 (+) False G185145
XR_005637002.1 lncRNA downstream 32335 17686696 ~ 17687464 (+) False LOC120546941
TU250762 lncRNA downstream 32581 17686942 ~ 17688280 (+) True LOC120546941
XM_039782079.1 mRNA upstream 29390 17615329 ~ 17623112 (+) True slc2a12
XM_039782080.1 mRNA upstream 29390 17615342 ~ 17623112 (+) False slc2a12
XM_039782082.1 mRNA upstream 30902 17615334 ~ 17621600 (+) False slc2a12
XM_039782083.1 mRNA upstream 32621 17615334 ~ 17619881 (+) False slc2a12
XM_039781637.1 mRNA upstream 56448 17560853 ~ 17596054 (+) True sgk1
XM_039781339.1 mRNA downstream 17152 17671513 ~ 17686499 (+) True LOC120546414
XM_039782210.1 mRNA downstream 20032 17674393 ~ 17677036 (+) True LOC120546940
XM_039782456.1 mRNA downstream 55438 17709799 ~ 17758414 (+) False eya4
XM_039782454.1 mRNA downstream 55438 17709799 ~ 17758414 (+) False eya4
XM_039782457.1 mRNA downstream 55438 17709799 ~ 17758414 (+) False eya4
TU250558 other upstream 286525 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 286525 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 356801 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 819188 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 875901 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 14811 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 28197 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 262492 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 366602 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 366602 18020963 ~ 18052071 (+) False fndc4a

Expression Profile