RNA id: XM_039781168.1


Basic Information

Item Value
RNA id XM_039781168.1
length 3727
RNA type mRNA
GC content 0.47
exon number 18
gene id hbs1l
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17480198 ~ 17504874 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAATCTTGTTTGAAagcaagtttttattttaatgactagCTATATTATTTAGCCTGCCCCGAGCTTGCCATCCagcaaaagacacaaaaaactTCGAAATTtgagacctttaaaaaaaaatctgatttatttgatttatttccGAGTCTGCTGAATCAAATCTGACCCAACGTTAACTTAGCTACTGCTGTCATTTCACACTAGCTACTGCAACAGCAATGGCAGTCGGGCAGTGAGACACATGTCAACAGTCTGTGAGCCGAAAAACATTTACGCTGGGGGCGAGAGAAGACACTTAGCAAAATGTCTCGGCACAGAAATGTTCGAGGTTACAACTACGATGAAGATTTCGACGATGATGACATTTATGGACATTCTGTAGATGACGACTGCTGTATATCACCAGCAACAGCAAATCAGTTTATCTACTCTCGTCAAGAGAGGCAAGCACCAAAAGAGGGGCCTTTAGAAGAGGAAGAATATGAAGATGATGTACCCATGTCCCCTACCATCAGCCACAACCTTGACCCTCTTGACCAAGCCAAGCTGTATTCCTGTCTGGACCATATGCGGACTGTTTTGGGAGATGCAGTGCCAGACTCAATCCTGACCCAGGCAGCCATAAAATGTGGATTCGACCCACAGAAGGCATTGGATGCAGTCCTGTCTGAAGACGCTAAGACAGCCCCAGTTACCAGAAGTACCAATGAAGAGACAGCTTCGGTAGCAAGAGTTAGCCAGGAGAAAGCACCGCTTCCACAAAGAACCAAACAAGCGGCCGTGGTTGAAAAAGCTAAAATAAGAGATGTGTCTCACAATAAACTGGACTCTGAAGTGGTACCCAAAGTGGCCCGTATGACAGTCTCTGGCAAGAAGCAGACCATGGGCTTTGATGTTCCCAGCACAGGGGAGAATGGCATTGTCACGGCTTCGGTACGCCGTGGTGGCAGCCCTGAAAACGCCACCGCAACCCCTCCCTCAGAGGCCACGCCCAAGCGCCCTGAGACTCCAGCTAAAGGGTCCAATGGAGACGAGCCCTCTACAGTTCCCACCCCAGGCCGCTCCTCTGGAAAGGCTCGGCAGTCGATCAATATCAAAGCTGAATTGGAGAAGAGGCAGGGGGGCAAACCTCTGTTAAATTTGGTTGTTATAGGTCATGTGGACGCGGGTAAAAGCACACTGATGGGCCACCTGCTTTATCTGCTGGGCAACGTCAACAAGCGCACCATGCACAAGTATGAGCAGGAATCGAAGAAGGCGGGAAAGGCCTCCTTCGCCTATGCTTGGGTCCTAGATGAAACTGGCGAGGAGAGGGACAGaggtgtgacGATGGATGTGGGCATGACCAAGTTTGAGACAAACTCTAAGGTGGTGACCCTGATGGATGCACCAGGACACAAAGACTTCATCCCCAACATGATCACAGGAGCTGCACAGGCCGACGTGGCGGTGCTGGTGGTGGACGCCAGCCGAGGAGAGTTTGAGGCAGGCTTCGAGGCGGGCGGTCAGACCAGAGAGCATGCCCTGTTGGTGCGTTCGCTTGGTGTCACTCAGCTGGCTGTAGCTGTCAACAAGATGGACCAGGTAAACTGGCAACAAGAGCGTTTCCAAGACATCATTACCAAACTTGGCCATTTTCTCAAGCAGGCAGGATTCAAGGAGTCTGATGTTTTCTACATCCCCAGCAGCGGTCTGTCAGGAGAGAACCTCACCACCAGGAGTACAGTGTCACAACTTATCTCTTGGTACTCTGGTCCCAGCCTGCTGGAGCAGATTGACGCCTTCAAAGCACCCCAGCGATCCGTAGACAAACCGTTCAGACTGTGTGTCTCCGATGTGTTCAAAGACCAGGGTTCAGGCTTCTGTGTTACAGGGAAGATCGAGGCTGGTTACATTCAGACCGGAGAGAGAATACTGGCTATGCCTCCCAATGAAACCTGCACTGTCAAAGGTATTACTCTACACGATGAAGCTCTGGACTGGGCTGCAGCAGGAGACCATGTCAGCCTGACAGTCACCGGCATGGACATCATCAAGATCAATGTGGGCTGTGTGTTCTGTGATCCAAAGGAGCCTATTCGAGTCTGTACTCGATTCAGAGCCCGAATCCTTCTCTTCAATATCGAGGTTCCCATAACAAAAGGCTTCCCAGTCTTGCTGCATTACCACACAGTCAGTGAGCCGGCCACCATTAGGAAACTGATCAGCGTTTTACACAAGAGCAGCGGCGAGGTCCTCAAGAAGAAACCAAAGTGCTTGAGTAAAGGCATGAATGCCATCGTGGAGATCCAGACCCAGAGGCCGGTGTCATTAGAGCTGTACAAGGACTTCAAGGAGCTGGGCCGCTTCATGCTCAGATATGTCGGCTCCACCATTGCTGCAGGGGTTGTCACTGAGATCAAAGAATGAAGAGCCTTTCCATCGACACCGAGCCAGTCAGACCTTACTCTGGAGACTGCATGCAGCCAGAGACAAAGTGCAATTCCTCTAGAGATTCCCCTTATGGACTCAGAGTGTCACATTCATCCAGCGACGTCTCCCATCTAGGGTCAACACTAACTGCACAGTTACAACGTGGCATGATGCTGAGCAGCCTCCTCCGGCAAACAGGAGCATTACCCAGCGCCCCTCCTCCACTTCAAATTTTCCCACCGTctgaccatttgttttttagtaCAACCTCTGTGCTCTAAATTCACTGTTTGATCAAGccaaaacaataatataatCCAACTCTGAAAGTCAATCTTACCACACTGAAATTTTAACAGTGATTAATGTCAATTTACTTTCCCTGAAGAAGCCATGGCTGATCATTTATCTTGACTTGAAAGAACCCTGGTGTAGCAACCAGTGCAGATAGTTTAACTGGAGCTGTTGACAAATCAGCTGTGGTGTAAGCATGACATTTGCTTTCTGGTGTATGGAGTCCACGTTTTTTCTGTTAAGATGAGGAATAACATCACAGCTTCACAGTATAATAAGGCTCTCCTAATCAAAACCGCTGACATGAAATAACTAATTTTAAATGACAGAAATGACGAATGAGATGTAATAACATGCGGGAGTTGAAAgcaacatttattatttttaccaTGAGCATGGAGACACTCTAACCAAGGTagtttgtaaaacaaaaagggAAACTTTCAAATGTTCCTCTCTGGATAAAGAGACATCACTCTCATTTATGTCAAACAAAAGTTACTTGAAATGCTTTAACAGTAAAGCACCAACGTGCTTTTTGAAGTgctcatctgtgttttttttttttctatcaaagactcagcgaggaggaggagggttgaaGGAGCTGTGTTTCTATTTTCTCCATGTGTTGGTGAAGGTAATGTGAAGGAAGACGATGCAAAATGAACTTGACATCAGTAATCTGTGGTTTGAGTTTTGATTTCAGCAGTTTGAAGAGTCTCCTTTTTAATCCAACTCATAAAAAGAATTCTCTAAATCCTTGTGACAGGTTTCTGGAGTACAACCTGTGAAAAATAGCATCATTAAAAACCTGGGGTTTTCTACGTCTCAAAACATATGTAAAAGTAGGTAGGAAGTGAAAATGTATTGGTGATTATTTCCCGTCAAGGTTTGACAGTGACACAGATGGGGTTGTTCCTGCTGGAGTGGAAAGCACCCTAAAAGACACAACTCACTGTCACTGTATAGAAGCAACAACACTCAAAGTAAACTTGTTTGCAGTCGTCGTTTTACAAA

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14416 HBS1; elongation factor 1 alpha-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250659 lncRNA upstream 10637 17468552 ~ 17469575 (+) True G185067
TU250641 lncRNA upstream 27150 17451766 ~ 17453062 (+) False LOC120546214
TU250700 lncRNA downstream 30980 17535854 ~ 17548289 (+) True G185103
TU250704 lncRNA downstream 45684 17550558 ~ 17551105 (+) True G185107
TU250710 lncRNA downstream 48568 17553442 ~ 17553909 (+) True G185112
TU250737 lncRNA downstream 128245 17633119 ~ 17667720 (+) True G185134
XR_005636848.1 lncRNA downstream 132078 17636952 ~ 17654361 (+) True LOC120546270
XM_039781679.1 mRNA upstream 50210 17407774 ~ 17430002 (+) False LOC120546616
XM_039781678.1 mRNA upstream 50210 17415923 ~ 17430002 (+) True LOC120546616
XM_039781013.1 mRNA upstream 88493 17378182 ~ 17391719 (+) False mtfr2
XM_039781170.1 mRNA downstream 2080 17506954 ~ 17515583 (+) True aldh8a1
XM_039781637.1 mRNA downstream 55979 17560853 ~ 17596054 (+) True sgk1
XM_039781639.1 mRNA downstream 82916 17587790 ~ 17596054 (+) False sgk1
XM_039781640.1 mRNA downstream 84705 17589579 ~ 17596054 (+) False sgk1
XM_039781638.1 mRNA downstream 86572 17591446 ~ 17596054 (+) False sgk1
TU250558 other upstream 114235 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 114235 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 184511 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 646898 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 703611 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 164298 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 177684 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 411979 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 516089 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 516089 18020963 ~ 18052071 (+) False fndc4a

Expression Profile