RNA id: XM_039781169.1


Basic Information

Item Value
RNA id XM_039781169.1
length 3421
RNA type mRNA
GC content 0.45
exon number 5
gene id hbs1l
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17480198 ~ 17504874 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTACGTCAGCAAAAAAATCTTGTTTGAAagcaagtttttattttaatgactagCTATATTATTTAGCCTGCCCCGAGCTTGCCATCCagcaaaagacacaaaaaactTCGAAATTtgagacctttaaaaaaaaatctgatttatttgatttatttccGAGTCTGCTGAATCAAATCTGACCCAACGTTAACTTAGCTACTGCTGTCATTTCACACTAGCTACTGCAACAGCAATGGCAGTCGGGCAGTGAGACACATGTCAACAGTCTGTGAGCCGAAAAACATTTACGCTGGGGGCGAGAGAAGACACTTAGCAAAATGTCTCGGCACAGAAATGTTCGAGGTTACAACTACGATGAAGATTTCGACGATGATGACATTTATGGACATTCTGTAGATGACGACTGCTGTATATCACCAGCAACAGCAAATCAGTTTATCTACTCTCGTCAAGAGAGGCAAGCACCAAAAGAGGGGCCTTTAGAAGAGGAAGAATATGAAGATGATGTACCCATGTCCCCTACCATCAGCCACAACCTTGACCCTCTTGACCAAGCCAAGCTGTATTCCTGTCTGGACCATATGCGGACTGTTTTGGGAGATGCAGTGCCAGACTCAATCCTGACCCAGGCAGCCATAAAATGTGGATTCGACCCACAGAAGGCATTGGATGCAGTCCTGTCTGAAGACGCTAAGACAGCCCCAGTTACCAGAAGTACCAATGAAGAGACAGCTTCGGTAGCAAGAGTTAGCCAGGAGAAAGCACCGCTTCCACAAAGAACCAAACAAGCGGCCGTGGTTGAAAAAGGAGCCTGCTTGCCCGCTTCTCACACAGACATTACGTCCAATGCACATAAACCCCAGACCGATTTGTGCGAACACAAATACCCACGTGTGCAAACAAGTGCACCAAACTTGCGTGACCTCTTATCGCAACATAAGGTTGACCCTGTGGTTAGCAGCTCTGAAACTCTAAGTTGTATCCATCAAAACAATGGTCCAGGTGTTAGCAGTGGTGCCAGTCTGGCACAGCTCATGTCACAGCATGAGCAGAAGAGTAAGGCGACAGGAGTAGTTAACACAGGGAGAGGTTTGGGTGTTCCCTCAAGTGCTTTCACCATAGGACCTAATTCACCTCCGTCCATCATGTCTAATCAGAATAGTCTTTCATTGGGAACATTGGCATCTTTAAACATGACTTCAGCATCCCACGGCTCAGCTCCCTCGCTCCTTTCAGTTTCACTCCATAGTCTGTCGCTTAATACTCCCAAGATAACAACTGCAAGTTCTTCTCCGGCTGCTCCTCCTGGGTTTGGGAGTCTCAGTTCTGTCCTCTTGAGCAGTCCGCACCCAGTGGGAGTTGGGACTGGAGGCAAAGCCACAATGGCTGATCCTAAGGGAAGCCAGTCATTGGCTGATTTAATCCAGGAACATTCAAACCGCAGCCCGACCATGAGTTCCTCCTTTCCTACTCTCCAAAGCAGCATAACTTCTGTGACGTGTCAGGGGATGGCTGCACAAACACTCTCGCTGTCTAGCCTCACTTCACAGCACCAAAACAGGGATACGCACATTCAATCACAATCACAGAGCACTAAACAACCAGCAAACACACTCTCCTTTTCTAAACCAACCAACAATACTCCTGCATGCCTAGGTGGTACTGTCTCATTGTCTCAGCTAGCCCTGCAACATCAAACCACCAGTTCCTTTACTTCCCCTCAACCCATCAGGGCTGAATCTCCAGCAAATGCACTTAAACAACCACCTGGCAACTCTGAGCTGCTCTCTTTGTCACATTTGGCATCTGAACACAAAGGCAAAACCTCAACCACCTCAAATGGGTCACAGTACTCCCTCACCTCGCTCCTTTCACCAGCTAAACCAGAGAGGGCTGATGCGTTAGCAGAAAGTACTACAGAGGGTGGGACCAAGCGTAAGCTCGACCACAAACCATACAACCAAAACGTCAGGCTACCTAAGCTGAAGCAGGCTATTGATTTGAGTGCACTCATGGCCCAGTCAGACGAAGCAGGCCCTCGTCACTTTGACAACGACCTCCCTTCACCGTCCTCTCCAACTTCAGTTGCCGTGGGGCTGGATGCTTCAGTTTTTGCACAACCATCAGTATTTGCGATTACTTTGTTGATTCAGAGCCACACACCACAGAAGAGGAAAAGGAATATATTGAGGGGAAAAGTAAGAGGTCAGAGGACAGGAAGTGGTTACCAGGCCTTCCTGTGTAAATCACAGCACAAATCCGAAGAGCATCATGTACCACTCTCGCCAATTGTACCATTCCGCTTTGACGCGCCTTCGCCCGACGACATCGTCCGTGCTAATCAGCGAAAAGCTTTCACCAGGTAGAGAAGAGGATAAAAAATAGCACTTAATTCAGCTGCGTCTAGTTGGTGCTGCATTGACTCACTTGGGAGGAGAACCTGAGATCTTTTTGGTGGCCTTTCCTCCACCAACTGAACTAAACTCAAAGAGATGCAGCATTCGATCGTCAGTCtttttaactgaaataaaataaacttttgGGACCAACAGTACGACAGAATAAGACACTTGCTGTTGATCAGTGCTAAAAATTACTCTTCTAGGAAAAGTATTATTacagcattattttttttatagaggcaAGCAAACAAGTCAATGCTGTTTAAGTCCAGCAGGATTACAGTAAGTACTCAGTCTCTCTGGCAGCTTGAAAATAATCGCAGCTTTTAAAGTACTAGTATTTTATTACTACTACTAAACCTActagtattttattttctcatttacTGTAACTTATTTTTCTATGCTTGGATGGCCATTTACTTTTTAATTGACACGTTTTGTATGAGAATAAATTAGTTTAATCTTAGCCAGGGAAAATTCAAAATGTATATCTTTCTGCATGACCTCTTTTCTAGTTTTGATCTGCATGAACCctcaaaagagaaaaagaggttGATTTTGTTTGCAGGTGTGCTGCAGCTATTGGAATATGGATCAGTTAACCATTGTTCTGGTTTACTGCTGCCTGTGTTTGAGATCATGGGGTAGGCATTTTGGTTTAGAGGACACCTGGAGATTTTCCCATGAGGGAGCGAGAACAaatgcacgtgcacacacacacacacacacacacacacactcttttaaTGTTTGATATTGAAGAACTGAGTTAACTATGAATGCAAGCACTGTGAATAAAGAGTGCACTATGTGACTCAAAATGACTGCCTTCAGACCTGAGGTAAAATGACTTTTGTTTTGCTCTTACAAGCTTTTAATATTACAATGTACAAATGAGTTTGATTTACACTGGGTGTGTCATGACACTCTGCCAGAGGTTAATTTGCCAATTTCGAAATAAAGATTACTACACGTAGGTACCCTGAATGCACCTGTGTCTGGGCGTGTCTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250659 lncRNA upstream 10623 17468552 ~ 17469575 (+) True G185067
XR_005636836.1 lncRNA upstream 27136 17449530 ~ 17453062 (+) True LOC120546214
XR_005636837.1 lncRNA upstream 27136 17449531 ~ 17453062 (+) False LOC120546214
TU250641 lncRNA upstream 27136 17451766 ~ 17453062 (+) False LOC120546214
TU250646 lncRNA upstream 27136 17451766 ~ 17453062 (+) False LOC120546214
TU250700 lncRNA downstream 50258 17535854 ~ 17548289 (+) True G185103
TU250704 lncRNA downstream 64962 17550558 ~ 17551105 (+) True G185107
TU250710 lncRNA downstream 67846 17553442 ~ 17553909 (+) True G185112
TU250737 lncRNA downstream 147523 17633119 ~ 17667720 (+) True G185134
XR_005636848.1 lncRNA downstream 151356 17636952 ~ 17654361 (+) True LOC120546270
XM_039781679.1 mRNA upstream 50196 17407774 ~ 17430002 (+) False LOC120546616
XM_039781678.1 mRNA upstream 50196 17415923 ~ 17430002 (+) True LOC120546616
XM_039781013.1 mRNA upstream 88479 17378182 ~ 17391719 (+) False mtfr2
XM_039781012.1 mRNA upstream 88479 17378965 ~ 17391719 (+) True mtfr2
XM_039781011.1 mRNA upstream 88479 17378965 ~ 17391719 (+) False mtfr2
XM_039781170.1 mRNA downstream 21358 17506954 ~ 17515583 (+) True aldh8a1
XM_039781637.1 mRNA downstream 75257 17560853 ~ 17596054 (+) True sgk1
XM_039781639.1 mRNA downstream 102194 17587790 ~ 17596054 (+) False sgk1
XM_039781640.1 mRNA downstream 103983 17589579 ~ 17596054 (+) False sgk1
XM_039781638.1 mRNA downstream 105850 17591446 ~ 17596054 (+) False sgk1
TU250558 other upstream 114221 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 114221 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 184497 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 646884 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 703597 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 183576 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 196962 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 431257 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 535367 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 535367 18020963 ~ 18052071 (+) False fndc4a

Expression Profile