RNA id: XM_039781211.1


Basic Information

Item Value
RNA id XM_039781211.1
length 4821
RNA type mRNA
GC content 0.49
exon number 30
gene id med23
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16109352 ~ 16126914 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGATTGTTTTTGAAGTTGCGCGTCTCGCGGCGCATTCATTTCGGTGcatgttagcagttagcttgTAGGTAGCATTGTTTGCACGAAAGGAGTAACGTTAACCTATTGATTTGTGTGATGGTTCGCTAAAAGGTGACACTTTTTGATGCAAACATGGCGCTTTCGATGGAAACGCAGCTCCAGAGCATCTTTGAGGATGTTGTGAAAACTGAGATGATAGAAGAGGCCTTTGCTGGGATGTTTATGGACACTCCAGAGGATGAGAGGACTAAACTGATCAGTTGTCTGGGAGCCTTCAGACAATACTGGGGGACACTACCACAGGAGTCCCATGAACAATGTGTGCAGTGGATAGTCCGGTTTATACACAGCCAGCACAGTCCCAAAAGGATCTCCTTTCTCCACGACTGTCTAGCAATGGCTGTGGAGACCAGTCTGTTACCGCCCagGATGGTGTGTGTCGCTCTGATAAGCTCGGACAGTTTAGAATGGGAGAGGACTCAGTTGTGGGCATTAACTTTCAAACTGATTCGCAAGATCATTGGAGGGGTGGACTACAagggtgtTCGAGACCTGTTGAAAGCTGTACTGGATAAAATTCAAACCATTCCTACCACCGTCAGCTCAGCTATAGTCCAACAGCTTCTGGCTGCCAGAGAGGTTGTAGAGTATACCCTAGACAGAAATGCCTGCCTCCTTCCAGCCTACTTTGCCGTTACAGAAATCAGAAAACTTTATCCAGAGGGACAGCTATCACACTGGCTTCTAGGAAGTTTAATATCAGACTTTGTGGACAGTTTCAGACCCACAGCCAGAATCAACTCTATCTGTGGTCGGTGCAGCTTGTTACCAGTAGTGAATAACAGCGGGGCCATCTGTAACTCCTGGAAGTTAGACCCTACTACTCTGCGCTTCCCTCTGAGAGGCATGCTGCCGTTTGACAAGgACCTGTTTGAGCcacagacaggcttgctgcgctATGTGTTGGAACAGCCATATTCAAGAGAAATGGTGTGCAACATGTTAGGACTCAACAAGCAGCATAAGCAGCGTTGCCCAGTGCTGGAGGAGCAGCTGGTGGATCTCGTGGTGTACGCTATGGAGCGCTCCGAGACCGAAGAACACTTTGACGCTGACGTCGGAGGAACTAGCCAGTTGCTGTGGCAGCACCTGTCCTCCCAGCTCATCTTCTTTGTGTTGTTTCAGTTTGCAAGCTTCCCTCACATGGTGCTGTCGTTACATCAAAAGctTGCAGGTAGAGGTCTCATTAAAGGGAGAGACCACCTGATGTGGGTTTTGCTGCAATTCATATCAGGAAGTATTCAGAAGAATGCCTTAGCTGACTTCCTGCCTGTCATGAAGCTCTTTGACCTGCTTTACCCAGAAAAAGAGTGCATTCCAGTTCCAGACATTAACAAGCCCCAGTCCACTCATTCCTTTGCAATGACCTGCATTTGGATCCACCTGAACCGCAAAGCTCAAAACGACAACTCCAAACTCCAAATACCCATACCACACTCTCTAAAACTACATCATGAGTTTCTCCAGCAGTCGCTGCGTAGCAAGACTCTTGGCATGTCCGACTACAAGATAGCCCTGCTGTGTAACGCCTACAGCACCAACTCCGAGTGCTTCACTCTGCCTATGGGCGTCCTGGTAGAGACGATCTATGGAAACGGATCTATGAGGATCAACCTACCTGGCATCAACTGCATGGCGTCAGGGTCTGTCACCCCGCTGCCCATGAACCTGCTGGATTCACTTACAGTGCATGCAAAGATGAGTCTGATCCACAGTATTGCCACACGGGTAATAAAGTTGGCCCATGCCAAATCCAGCATCGCCCTGGCCCCAGCACTGGTAGAAACATACAGCAGACTGTTAGTCTACATGGAGATCGAGTCATTGGGCATCAAAGGATtcatcaGCCAGTTGCTGCCTAATGTTTTTAAGTCTCATGCGTGGGGAATCCTTCACACATTATTGGAGATGTTCAGCTACAGGATGCACCACATTCAGCCACACTACAGAGTCCAGCTACTGAGTCATCTGCACAGTCTGGCTGCTGTGCCCCAGACCAACCAGAACCAGCTGCATCTATGTGTTGAGAGCACAGCTCTTCGGTTGATCACAGCCTTGGGGAGTTCAGAGGTGCAGCCCCAGTTCACTCGCTTCCTCAACGACCCAAAGACAGTTCTGTCAGCTGAGTCTGAAGAGCTGAACCGAGCCTTGATCCTCACTCTGGCCAGAGCCACACACGTCACAGatTTTTTCACAGGGTCCGACTCCATCCATGGGACTTGGTGTAAAGACATCCTCCAGACCATCATGAACTTCACGCCTCATAACTGGGcctcacacacactgtcctgctTCCCTGCTCCACTACAGgCGTTCTTCAAACAGAACAATGTTCCTCAGGAGTCTCGATTCAACCTGAAGAAGAACGTAGAAGAGGAGTACAGGAAATGGAAGTCCATGGCCAACGAGAATGACATCATTACCCACTTCTCCATGCAGGGCTCACCCCCACTCTTCCTCTGTCTGCTGTGGAAGATGCTGCTGGAGACGGACCACATTAACCAGATAGGCTTCAGGGTCTTAGAGCGCATCGGGGCTCGTGCACTGGTGGCTCATGTGCGAACATTTGCAGACTTCCTTGTTTATGAGTTCTCAACATCAGCCGGCGGGCAGCAGCTCAACAAGTGCATTGAAATACTCAACGACATGGTCTGGAAGTACAACATAGTCACCCTGGATAGACTCATCCTGTGTCTGGCGATGCGTAGCCATGAGGGCAACGAGGCTCAGGTTTGCTACTTCATAATCCAGCTGCTGTTGCTGAAGCCCAACGACTTCAGGAACCGCGTCAATGATTTTGTCAAGGAGAATGCTCCTGAGCACTGGCTGCAGAGTGACTGGCACAACAAGCACATGAGCTACCACAAGAAATACCCAGAGAAGCTCTACTTTGAGGGACTTGCGGACCAAGTCAATCCTCCCATGCAACTCCAGTCTCAGTACCTGCCCATCTACTTTGGCAACGTGTGCCTGCGCTTCCTGCCCGTCTTTGACATCGTCATTCACCGCTTCCTGGAGCTTCTTCCTGTCTCCAAGTCTCTGGAAACGCTGCTGGACCATCTGGGAGGGCTGTACAAGTTCCATGaccGCCCAGTCACATACCTGTACAACACACTTCACTACTACGAGCGACATCTGAGAGACAGAACCAACCTGAAGAGAAAACTGGTGCACGCCATCATGTCTTCACTGAAGGACAACCGTACCCCAGGGTGGTGCCTTAGTGAAACCTATCTGAAGTTTGGCATGAACCCCAGAGAGGACAACGTGTGGATCCCTGATGACACCTACTACTGCAAGCTGATTGGACGCCTGGTGGACACCATGGCTGGCAAGTCACCTGGTCCCTTCCCAAACTGCGACTGGAGGTTCAATGAGTTTCCCAACCCTGCGGCCCACGCCCTGCACGTCACCTGCGTAGAGCTGATGGCTTTGGCCGTGCCGGGAAAAGATGTCGGCAACGCTCTGCTCAATGTTGTGTTGAAGAGCCAACCTCTGGTCCCCAGAGAGAACATCACAGCTTGGATGAATGCAATTGGACTTGTGATAACCGCCCTTCCTGAGCCCTACTGGATCGTTCTCCACGACCGCATCGTGTCTGTGATGGGTTCTCCGGCGCTGACATCAGAGACAGAGTGGGCAGGTTATCCTTTCGCCTTGCTGGACTTCACAGCCTGCCACCAGAGCTACAGCGAAATGAACTGCAGCTACGTGCTAGCATTAGCGCACGCTGTGTGGCATCACTCATCCATCGGACAGCTGTCTCTGATTCCCAAattccTGTCAGAGACACTGAAGCCCGTCGTCCAGACAGAGTTCCAGTTACTCTACGTGTATCACCTGGTGGGGCCGTTCCTGCAGCGCTTCCAGCAAGAGAGGACACGATGCATGTTGGAGATTGGCGTGGCCTTCTACGAGATGCTCCAGGCGGTCGACCAACACTGCCAACATCTCAGCTACATGGACCCAATCTGTGACTTCCTCTATCACATCAAATACATGTACACTGGAGACAGCGTGAAGGAGCAGGTGGAGAAAATCATCATGACCTTACGTCCGGCCATGAAGCTGCGACTGCGCTTCATCACACACAGCAGCAAGATCGAGACTTCATCAGCAGCTGCCAACGTCGcctccacttcctcctccacccctCAGCCCCCCACCTCCTCACTCTCTTCGTCCTCTGCCGTCGCCTCCCCCTCTTCCGCACAGCACGCGCACACACCTATATAGGTAAACACAGTTACAATCATGACAATGGACTTTCACACACATGTCTAAATTTTGCTTAAAGTAAGGgttaaaaatgtttattattgtaCTTTCATAACAAGAAACCTGGAGAGCTGATTGTATTCCCCCACCCTTCATAAGTGTATAAAAACATCGTATTTCCAAAATCTTAACTTTTCAAAAGTGAAAAACCCCAGCTGATTTCCTGTCTATGAAACTGTCAGAATGAATCACTTTGACAGAATTCAGAGGTACTAATTTTGAGAGTATCTCAGAAGTGAAGAatctcaagcaaaaaaaaatgtaattatcagAACAGGCATCTCTATGCTATCTCAACAAACCGTACACTAATATGCACCTCTCTGTATTTGCTGCATTAAGGAGGGTCACGAGGACACAATATTTCTTGTTAATATCATGGcatcttttgtatttttctgtttgtagtcaatttttatattgtacatttttagttcATTAAAAAGATTTTGGTAATATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249948 lncRNA upstream 61671 16045809 ~ 16047681 (+) True G184584
TU249901 lncRNA upstream 181690 15926071 ~ 15927662 (+) True G184540
TU249893 lncRNA upstream 187554 15914645 ~ 15921798 (+) False LOC120546249
TU249994 lncRNA downstream 164297 16291211 ~ 16356548 (+) True G184618
TU249989 lncRNA downstream 206141 16333055 ~ 16391851 (+) False nkain2
TU250006 lncRNA downstream 252593 16379507 ~ 16381781 (+) False cenpw
TU250010 lncRNA downstream 273994 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA downstream 275288 16402202 ~ 16404077 (+) False G184628
XM_039781072.1 mRNA upstream 67113 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA upstream 67113 16025160 ~ 16042239 (+) False coq8aa
XM_039781069.1 mRNA upstream 94493 15986083 ~ 16014859 (+) True itpkb
XM_039781070.1 mRNA upstream 94493 15986083 ~ 16014859 (+) False itpkb
XM_039781050.1 mRNA upstream 231603 15853810 ~ 15877749 (+) True tmem200a
XM_039782626.1 mRNA downstream 121180 16248094 ~ 16335415 (+) True nkain2
XM_039782560.1 mRNA downstream 214024 16340938 ~ 16352655 (+) True rnf217
XM_039782561.1 mRNA downstream 214025 16340939 ~ 16352652 (+) False rnf217
XM_039781851.1 mRNA downstream 230645 16357559 ~ 16375214 (+) False tpd52l1
XM_039781853.1 mRNA downstream 230646 16357560 ~ 16375214 (+) False tpd52l1
TU249895 other upstream 141229 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 393068 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 393068 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 445778 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 790516 15301925 ~ 15318836 (+) True G184458
TU250012 other downstream 272524 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 638631 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 698780 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 1166740 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 1214923 17341837 ~ 17365977 (+) False map7b

Expression Profile