RNA id: XM_039781271.1


Basic Information

Item Value
RNA id XM_039781271.1
length 3027
RNA type mRNA
GC content 0.44
exon number 5
gene id ccn2a
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15772660 ~ 15776217 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCAGAACTCAGATCAACTCCTCTACCGAAGCTAAACTCTAGCTTTCACCAAGAAAGACTGTGACCGGAGCAGCAGAGACACGCTACGAGACAAGAGATCAACTTGATCAGAAACGGTTTCTCAAGCTCAAACTCTAAGACTAAAGGAAAACTTTCTCAACAAGACTTAAGGAAAAACTAGAATCTATTTCTACAAGGAAGAAAAGATGTCTGCTGGAATGAAGAAAATGATTTTGCTGCCTTTCCTGAGCATCATGCTCTCATACATGGCTGCAGGTCAGGAGTGTAGCAACCAGTGTTCGTGCCCCTCCACTCCCCCTCAGTGCCCCCCAGGAGTGAGCCTGGTGCTGGATGGCTGTGGCTGCTGCAGGGTGTGTGCCAAACAGATGGGGGAGCTCTGCACTGAGAAAGACTTCTGTGACCCACACAAAGGCCTCTACTGTGACTTCGGAGCCCCCGTCAACAGACGCATAGGAGTGTGCACAGCTCGAGAGGGAGCCACATGTGTTTTCGGAGGCATGATGTACAAGAGCGGGGAGTCTTTCCAGAGCAGCTGCAAGTACCAGTGTACCTGTCTGGATGGAGCCGTTGGCTGTGTCCCTCTTTGTTCCATGGACATCAGACTGCCCAGCCCAGACTGCCCCATGCCGAGACGTGTCAAGGTGCCAGGGAAGTGCTGCGAGGAGTGGGAGTGTGACAGACACAGTTTCATGGGCTCTGCTTTGGCCGcctacagagaggaggagacctATGGCCCAGATCCCTCCCTGATGAGGGAGAATTGCCTGGTTCAGACTACTGAATGGAGCGCATGCTCTAAGACTTGTGGCCTTGGGATCTCCACCAGGGTCACCAATGATAACCGTGAATGCCGCCTGGAGAAACAGACCCGGTTGTGTATGGTGCGACCATGCGAGTCACAGCTGGAGCAGAGCATTAGGAAAGGAAAAAAGTGCATCCGTACTCCCAGACTCTCAAAGCCCATGAAGTTCGAGATCTCTGGCTGCACTACCACCAAGTCCTATAGGCCAAAGTTCTGCGGCGTCTGCCTGGATGGACGCTGCTGCACCCCCCACAGAACCACCACCCTGCCCATGGAGTTCAAATGCCCCGACGGACAGGTGATGAAGAAGCACATGATGTTCATCAAGTCCTGCGCCTGTCACCATAACTGCCCCGGGGAGAACGACATCTTCGAGTCCATGTATTACAAGAAGATGATGGGAGACATGGCGTGAGCCACTGAAGGACGATCACAGCTTATGActtgaaaacaaacagaactCCATCTCATTTTGCAGCTcagtatatatgtttttttatgtttaattttcTCATTTTCTCATTGTAAAAGTATGGTCCAGACACTTGTTtaagtgtctgtttgttttgtatggCTGGCGCACATCAGCCACATAGACTCAGACAGAGGGTTGCATAGCAGCTCCAAGAGATTCCTGCACTATAACTTCTATTTTTGACAaacctactgtcaggttgctgcCCATTCCCCTTGAAATCCCCTTTACAGACCCGTCCATTTTACTGTATGCATTTTTATACATTATCTAAACCTTGACGTCCTCTCTAAATGAGGTGCCTAATAACTCCGCCCCACCCTTCGAGTCCAGACCAGACCTGGAAACTCTAAGCAGCTGTAGATGGAGCATGCAGACCACAGCAGGCCAGTGTTCCCCTGTCCAAACAGGTCTGAATGTGTccttgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgttagcaCAGGCCTGAATGTCAGCCTTGTCTCTGCATCTACGCTGTTCACCCTGCTCACAGAGTAGAGGAAAGGTCAGAGTTTCCGCCCCAGCATGTGATGAGAAAGCAAGCAGCGTGCTGAGTTTAAGGTTAGATATGGAACATAGTGGGCTTTTCCACcgcactgagaaaaaaaaaaaaaaaatgacatgttgaCTATTACTGATTCAGGTCAGAAGGAAGAAACCAAGTGTCTATAGGAAAAAAAGTCTATTTTGTAcaaaaatagaagaaaagaCTGGAAGAATTGTAATttcattccttttttattgttgatgtgtaaattatgtatatatttgtacaGTTTAAGTTAATTTAAAAGCCAAATTTGTTCTGTGCTTTAAAATGCATCgatagtgtatttttttttttttgtcgacagtattttttactattttattgagaagtgtgacaaaaatgttacaTGTTTCACTTTGTAGctggaaataaaatgttatattttttatacaaaCATGAGTTCTCCAATTTGTCTGTCTTTAAGTCCATGATATACACTACTATGGGATCTATTGACCAACGCCTTAAACTAAGCATACTGAACAGGCACAGGAATCACATGTTAGTGATCTGCATACTGTAACTATTACTTGTTCATGTTTAACTTTAGACATCTTTGCCAGTGCATGTATTAATTTGTAATTAACACAAAGATCACTCTCCCAGAGTGCAGGAAATCAACCTTGCTCAGTCACTACATCAAGTCTGCAGCTGAAGTGAACAAAATTGTGAAATTATTTAATCAGGTGGGAGTTTTCTTTATGATAATAAATATTGTTATATTCCCACCACAGGAATAACATATGTTGGTTTGTTCTTCCACTTTCCACTTATGTaacattatttactgtaatgccTTCTTCAGTAAACACAGacgtttaaaaaatgtataagttCTTATACAGAAAACAACATTAATAATGCACAGGACTGGTGGCTGTTTACCAAATTGCTCCTTATTGATTTGTTAGCTGAACTGAAAAAGCATAACATTGTGATTTAAATGTATTAGTTTATGCATTGATGCATGTTTTTTCTGTCATGTTTACATAAGAAAATATGGATATATGATACTGTAGGTTCTAAAGAACAAAAATTAAATGTCTCAAGGTGA

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0030903 notochord development biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K06827 CTGF, CCN2, IGFBP8; connective tissue growth factor (insulin-like growth factor-binding protein 8)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249854 lncRNA upstream 92501 15678997 ~ 15680159 (+) True G184508
TU249855 lncRNA upstream 117140 15654846 ~ 15655520 (+) True G184509
TU249823 lncRNA upstream 279133 15493204 ~ 15493527 (+) True G184481
TU249814 lncRNA upstream 293580 15478491 ~ 15479080 (+) True G184474
TU249805 lncRNA upstream 449772 15322575 ~ 15322888 (+) True G184465
TU249871 lncRNA downstream 1012 15777229 ~ 15780546 (+) True G184521
TU249880 lncRNA downstream 21598 15797815 ~ 15798794 (+) True G184526
TU249922 lncRNA downstream 113148 15889365 ~ 15889585 (+) True G184561
XR_005636843.1 lncRNA downstream 138369 15914586 ~ 15920914 (+) False LOC120546249
TU249891 lncRNA downstream 138428 15914645 ~ 15921798 (+) True LOC120546249
XM_039782619.1 mRNA upstream 33680 15730047 ~ 15738980 (+) True stx7l
XM_039781224.1 mRNA upstream 53028 15694944 ~ 15719632 (+) True dpf3
XM_039781225.1 mRNA upstream 53028 15694944 ~ 15719632 (+) False dpf3
XM_039781226.1 mRNA upstream 53028 15703036 ~ 15719632 (+) False dpf3
XM_039781221.1 mRNA upstream 84933 15680461 ~ 15687727 (+) True zfyve1
XM_039781050.1 mRNA downstream 77593 15853810 ~ 15877749 (+) True tmem200a
XM_039781069.1 mRNA downstream 209866 15986083 ~ 16014859 (+) True itpkb
XM_039781070.1 mRNA downstream 209866 15986083 ~ 16014859 (+) False itpkb
XM_039781072.1 mRNA downstream 240758 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA downstream 248943 16025160 ~ 16042239 (+) False coq8aa
XR_005636865.1 other upstream 56376 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 56376 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 109086 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 453824 15301925 ~ 15318836 (+) True G184458
XR_005636833.1 other upstream 479408 15289674 ~ 15293252 (+) False LOC120546207
TU249895 other downstream 138428 15914645 ~ 15968123 (+) False LOC120546249
TU250012 other downstream 623221 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 989328 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 1049477 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 1517437 17293654 ~ 17295701 (+) True G184996

Expression Profile