RNA id: XM_039781404.1


Basic Information

Item Value
RNA id XM_039781404.1
length 8091
RNA type mRNA
GC content 0.54
exon number 53
gene id nbas
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16965466 ~ 17134416 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTCTCCTGAGCGGTTCGCTACATTTTCCAAACGCGGTTCCCTGATATATCTTGTCCAGTGCTACTTGCCGTAGACTTTTGACAGCCTGTTCAAGTAAACATGGCTGAAGAAAGCCTGATTGAAGGCGAAGATGAAAACATTTTGTACGATTTACTTGTCATTACTGAATGGCCGGCAGAGACGGACACTCAGTTGCGAGGCAACAAGGAGCACAACACATCACTTATTGCAAAAGCAGTGACAGGGCCATTCCGCTTAATCTTGCACTACTTGTGGTACAGCCCTTCCAGCTCGTCTCTGCCTCTTGGTCTTGTCCGCCTGGCCAACAAGCAGATAAACTGGCAGCTGGTGCTTGCaagTAATGGCAAACTGTTGGCAGTGGTTCAGGACCAGTGTGTGGAGATTAGGTCTGTGAGAGATGACTTTGGCTCAGTCATCGGGAAGTGCCAAgTGCCAAAGGACCCAAACCCCCAATGGCGAAGGGTGGCATGGAGCCATGACTGCACCCTGCTTGCCTATGCCGACAGCACTGGCACCGTGCGCCTTTTCGACCTCATGGGCAGCGAACTCTTCGTCATCCCGCCGGCGGTGAGTTTTCCTGGGGATTTCAGTTGTGCAGTGGCGGGCCTGATCTTTCTGAAGTACACAGCCAGCGCCCAGTGGTCAGCCGAGCTGCTCGTTATCACATACGGTGGCGGGCTCAAGAGTTACCTAGTCAGtgtGGGGACCAATCAGAACTTCCAAGAGAACCACAGCTTCAGTTTCTCCGCTCACTACTCCCACGGCATCACCTCTGCTATTTACCACCCTGGCCACCGATTGCTACTAGTAGGAGGTTGTGAGTCAGGGGACGACTGTACGTCCAAGGCCTCTTGTTATGGGATTACAGCCTGGAGGACTCTGTCTGGATCGCCCCACTACAAACAGGTCACCAGCTACGAGGACGATGTCAGCGCGAATCAGAAGAGAGGTTTCTTCAAGATCCCCAGCTTCAGATTTTTTCCCAGACAGGGAGATGAGAAGGACGGTGTATTCCGCATGAGCCTGAGCCCCGATGGCACCCTGCTGGCTGTCATCCACTTCTCTGGTCGCCTGTCTCTCTGGGACGTCCCCTCCCTCAAACAGAGGGCCACATGGAGCCAAGACCAACAGCCAGGATTTGAGGAGATCAACCCAGAGTGGAAGATATCGCTGGAGAgaaggaagaaaataaaagATAAGGAACAGTACTACCCGCTGGTTGATGTAAGCTGGTGGAGTGACATTGTGTTGATTCTGGCTCGCTGCTCCGGCTCAGTCACCGTGTCATCCGTCAGGACACTGCGCAACCTGCTGGGGAAATCCTGCGAATGGTTCGAGCCCTCACCTCGAGTCACCGCGGCACACGACGGGGGCTTCCTCAACCTGGAGTGTGAGGTGAAGCTGGCTCAGAAGCGTGGGCGCCTGGAGAGCAAACTGAGCGGCGGGCCCAGTGAGGATGAGGAGGGTGATGATGGCGGAGACTCTGACTCAGACGATGAGTCCTCAGCCAAAGCCCGCTACTTTGGCTACATCAAGCAGGGCCTGTATTATGTGACAGAGATGGAACGGTTCGCCCCGCCACGCAAACGCCCCCGCACCGTAATCAAGAACTACCGTCTGGTCAGCCTGAGGTCAACCACACCAGAGGAACTGTACCAGAGGAAGATTGACAATGAGGAATACGGTGAAGCCCTGTCTCTTGCCCAAGCGTATAATCTGGATTCTGACCTGGTCTACCAGAGACAGTGGAGGAAGAGTACCGTCAGCATTGCCTCAATACAAGATTATCTGAGCAAGATCTGCAAGCGCTCATGGGTGCTGCACGAGTGTGTGGAGCGGGTTCCGGAGAACGTTGACGCCGCCAAGGAGCTGCTGCAGTACGGCCTGAAGGGAACTGACCTCGAGGCCCTCATAGCCATAGGAAACAGGGAAGACGGGGGAAGGTTTATCATGCCAGGCGACGTTGACCTCGACGACCTTCCCTATGAAGACATCCTGTCAGGCGATGAGGAGCTAGATATGAAGAAGGAGAGGGAGCAAAGGAAGAGACGGGAGCTGTTGGCCAGGGTCGACTTCAGCAGGCTGACTCTGGAGCAGAAGGAGCTGTGTCGGAGCCGACTGAAACTACTCTCCTACCTGGACCGACTGGAAACATACGAGGAGATACTTGGTGGGCCTCACGCAGCAGAGCAGAAATATGATGCAGAGTTCTTCAAGAAGTTCCGCAGTCAAAATATCGTTTTGTCAGCAAGAAACTACGCCAGGGAGAGTAACGTTCAGGCCCTGGACATCCTGTTCACGTACCATGGAGCCGAACTCCTCCAGCATCGGCTAGCTATCCTGCACAACTTTCCAGAAACTACCTCTCCACACGAGTACACCATCCTGCTGCCTGAAGCctgCATGAATGACGGAGGTGAGTTGGAGTTGATTCCGTGGGAcgagcagagacacagagagatggACTGGTGTGAGGCAGAGGAGTTCAGAGCATTGCTGGACCAGAACTTGTTTGATGACGACAGTTTCCTGTACGAGGGGGCCCCAGAGCTGCTGAGGTTCCGCACAGCCACACCTGCCATCGAGCTGCTGACCGACTGGTACCAAAGCAGAGCTAAGGACATCGACTCCGGCTCCAGACAGGTGGACTGCGCCCTATCACTGGTACGTCTGGGGAAGGAGCGGGAGATCCCAGGGCTAGAGCTCTTGTGCGATGACTTGGTCACCATGGAAACACTCGTGTATGAGACATCATGTGAATTGAGTCTGACACTTAAAGATTTGCAGCAGCTAAGCGACATCGATAAGCTCCACCTGCTCATGAAAAATTCCAGCACCGAGCGCTATGTGAAAGACGCCTTCCAGTGGATGGTGCCGTTCTTGCACCGATGTGAGGGGCAGAAAGAGGGCGCCGCTAAATCTCTGCTCAGAGAGTACTTGGTCAGCCTGGCCCAGCGAGACCTCACCCTGCCCCTCATCAACTTCCAGCACTCCAAACCTGACtgcCAGCAAAAGATCATTGGGGACCCAGACCAGCTGATGGTGGTCGCTCTGGAGTGCATTTACAGCTGTGAGAGAGATGACCAGCTCAGCCTCTGTTATGACATACTGGAGTGTCTGCCGCAGAGAGGCTAcggACCAGACACAGACATCACCGCATCCCTCCACGATCGGGTGGACAAACTTGAGAAGCATCTCAGTGTGGTGGAGGTTCTGGAGAAACACGGCCTGCAGAAGCCTATTTCATATGTGAGGAACAGCCAGAGCAGCGAAGAAGAAGCCCACCAACTAATGGTCAAACTGTGCCGCCACACTGGCCGCAAAAACCCTCCAGTGAGTGAGACGGTGTGGAGAGGTCTACTGCAGGACCTGCTCGACATGCAGCAGAATGTCTACACCTGTCTCAAACTGGAGACATGTCACCAGGTCTTTGTTGAGTCCCTGCTGTGTTCCAGCCGTGTTGAGAACGTACGCCTGGCAGGGCAGCTCATGCACTGCTCCAAGGTCAGCCAGGATGTTCCCGTCAGCTTGTCTTTCCGGGGTAAAGGTTACGCTCTGAAGGTGGCCTACAGCAACAGCTTGGAATTAGTGTTGGCTGCTGCCAGAGAGTACTTCAACTCGTCCACAACGCTCACAGACCCCTGCATGGGCTTGGCCAGGGCATGTCTCCAGCTGATCACAGACTGTCCTCCGGCCATTCAGGAGGAACTAGACCTCATCAGCGCCCTGAGCCAACTGGAAGACTTCAGCGTCAGTATCCTGCCGCTGCAAGTGCGCCTGCGATCAGACCGTCTGTCTCTCATAGAAGAGTGCATCGCCCACTGCTCCACGGCCTACAAGCAATCCACTACTCTGCTGAATCTGGCCTCGCTTCTCAGAGTGGCAGGCGATGACAAGGATGCACGGAAAGGCCAAGTGCTGACCCTGCTGGCAGAGCAGGCTCTCCAGTGTCTGGACTTCAAGGCCTCCTACATCCACTGTCAGGACCTCATGGCTGCAGGTTACAGTCCAGCGTGGGACGTGTGCAGTCTGCTCGGTCAGTGTGAGGGCTATGGCGACCTGGAGGCCCGGCAGGAGCTTTTAgccttctctctcacccactgTCCCCCTGACAACATCCACGGCCTCCTGGCTGCCTCCAGTGACCTGCAAACCCAGGTTTTGTACCAGGCAGTTAACTATCAAATGGAGCCTGTTATTACTGAGCGTGGACGAGAGGCCGACGAGACCGACTCTGTAAAGGCCTGCGCTCCCTCTGTAGGCTCCCCTGTGGGGGCAGCGGGGGACCTGCTGCACAGGACTACAGCTAAGACCATGAAGGTGCTGACCACTACAGGACTGACCACCAAGGCTGTACTGACTGCAGTCAGCGACCACCGCTGGTGGAAGGAATCACTCAACTACCTTCGACCACTGCAAGGTCACGGCGTAGGAGCCACTACTCAAGATGGGGCGTGTGAGAACTCCAACCTGCAGCGTCAAGGCTGTAGCCCTTTTTATCAGGAACTCATTGATGATCCCTGTGTAGAACTGAGTCTAGATGTGtactcgtcctacaaagacatGCCTCAGGAAAACTTTGCTGAGGTTTTGCTGAGGACCAGCAAAATGGCTGAGGCCAAAACTGAAGGAAAAACCCTGTTTCCTGCTACAGAGGTTTTGCTGCAGCTGGCCAACGATGCATTTCCCAGGGACATGATGCTGGCTCTGTCCTACTTACTGGCCCTGCCTCAGGTACTAGATGCCAACAGGTGTTTTGAGAAGCAGTGTCACTCTGCCTTGTCGCTCCAGCTGGCTGCCTACTACTACTCCCTGCAGATCTACTCCCTCCTCATACCTTGCTTCAAGGACAAGAACCACACTCTCTACCAGGCTGACCCAAAGGAGCTGATTCGATTGGTCACACAGCATGTGTCTGCATATTCGGATTGGCCGGAGGAGCTGCAGAAGTTGATCAGCCAGCTGCGTGTGTACAACGAGCGACTGACGGACTTTACCCAGGCCCAGGTGTTACAGGGGCTGGGCCGCGGAGTGGACGTCCAGCGCTTCAGCTCCGACCCCGACTACAAGAAGGAGACCATCCTTGGCCTCACAGAGACACTGGAGGACGACGTGTACCGAATCGCTCTGTCTCTGGCTAAGCGCTACAGTGTTCCTCTGTGGGAGGTCTACATGACTCACCTCGAGTTCCTCTTTACAGATAgcggTCTTTCCACCAAGGATATTGAATCCCGGAGCGAGTCCCTCGGTCTGTTCGACACGTTGAAGTGTAACCCTGAGGCCTTTTGCAGCCACATGACCAAGTACGTTCTGCCGACTGTGGAGGGAAGCGACCAGGACCGCCTGCTCTACTACTACACTTTACTAGACACTGCAGGTTGTGAGCCTTAcgtcaccaccaccatcaagcCAGAGTCCCATGTCAAACTGCTCAAGAAGCTTCGAGCTGTTGCCAATGGTTTGAACTACCGGAAGCTGACTGATGAATCGTTGGATCCGCTGGTGACTCTACAACCAGTTCTGACCAGTCAGAACGTACTGTCTATCTCCAAACTTGCTAATCGGCTGCCCGTGCTTGGTGGTGGAGGGAAAACAGTCTCCCCCAGTGCAGTCCACGCAGTATGGCTACAAAAGCTGTTTTGGAAAGGAGACCCCCAACTGTTGAAGAGACCCCCACAGAGCGACCCAGACTACCTCCATGCGTACGACACCTGCAGCAAATACCTAGACAGGCTGGTCCTTGCTGACGCTGTCCACTTCCTGGATAGCATCACCTTCTCTCCTGATGCAGCCGAACATCTGAGCATCCAGACGAGGTCGGAGGTGATAAAACGAGCCACCAAAGCCCTGCGCCAGCTGGCCGAGAAGAGCAGGAAGAGAGCAGGTGATGGCAGCGGGGAGAAGGAAGGGACCGACCCAGCAGGGATGACTTTTGATGAGGCTCTTACACACCTGCAGCAATCCCAGGCCCACCTGGACACTCTGAGCCATGCCGTCATTCTGTCACTCAAAGACAGCCAGCAGCGTTACAGGCAACTTTATGATTTGTCCCGATCCGAGAGGTCAAAAGTCCATGAGCTGGCAATCACCATGGCAACTGATGGACAGCCTCTGGACTGCATTACAGAGATTCTGCGCGTGGCTGTTGGACCCCTAGACCTCTCTGTTAAAACGGTGCTTCGTGACGCAATGGAGCGAGTAGTGGCCGCACTCAGTGGAGACCCAGATGCCCTGACAAATTACCCACAACCCCTCAGGGTCCTGGAGGCCATGGTGACCGCTGTGCACAATAATGTCCAGAGTGGTGACAACGCGGTGACTTCAGACGACCTCCTGGCTTGGTTGCGTCCATTCTGCGGTGACGCGGCGCTCCCTGTGCGCCCTCGAATCAACGTGCTGCAGATCCTGGAGAGTAACTTCAGCCTCCGAGACAGCGATGTCCGTCTTCTGCTGCTCTACAACTCTCAGGCTGTTCTGAAAGACAGAGAGGTTGAGATAGAAGATGTGGAGAATGAGGAGAAAAGATACGCCCTCTTCCTGGAGTTGCTGGAAGCTGCGCAACAGTGGGAGGACTTTCAGCTGCTCATGCTCCTCCTACAAGCGTGGCCACCCATGATGAAAGAGGAAGTGGCAGAGTCGGAGCGTAACCCCTGGGTGGTGCTGACCTCAACCCTGCTGACCCGCTGCCAGGCGTCCCAGGTCAACTTAGACCTGGGTCAGCAGGTTGTCACCATGGTGCGATCCCTCTATAACACCAAACACAAGATTCCTGCGCAGtgtaTCAGACATATAGCCACCCTACTGCTCCAAAACCAGCCGAGCCTCCGGCAGCCTGCACTCAAACTGATGGCTGAGAGTGGTGATGAGCAACTGCTGCAGCTGACTCTGGATCAGATCAACAGCATGACAGCAgaGACAGCGTCCTCCTGCGACGCCGAACTCCTCTCGTTGCTCCTGGATGCAGGGCTTCTAGTGGGCTGCGTTTCCTCAGCGCTGTACCCCCTGCTCAGCTCCCACATGCTGTCCCACCAGCAGGAGGGAGGCTGGGATGTAGACAAAGCCGCCGCCGAGCTGCTGGCGTCGGGCCACGGTCCCGAGGCGGGCTCCCTGCTGCTGGCTCACCGCGGGACTCACCAGGCTCAGTTCACCTTCAACTCGGCCTTGGCCGTTCTCAAGAAGTGGCTGTGAGGGGAGGAAGAACAAGGTGTGAGGGAAGGAGTGCGACGGGGAGGCAGTTTGGGCCGCAGCCACGAAGTGCGGATGATAAGGGAGTTTTCGTGAAGGGGGAGTGGGGAGGTGTTGACAGAGGAGAGGAATTAGTATGGATTGAGATCTAAAGAAATTAGCGTGAGGCGAGAATTGAAGTAATATCAGATCCTTTGCATTTTGTTCCGTAATTGGGTTCATCAACTGAAGACGTGTcaacagcagctgcagtgtCTGCCTTGACGGTATGAGAGCGGATACCTTTAATACTGAAACATCTCCTCaattagaaacacacacacacacacacacacccccacggATACAGAAACACAACCTCTGCTGTCTCTCCATCATGAATGAATGTTCAGACTGAGGTTTGATCAGAAAATGCACCTCCCGCTTTCATTtacttaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctattgTGTGATAAAGTAATTGAGCAGTAGCCGAGAAGCAGTGGGTGGATATTAGCCTATTGTTCCGTGACAGGTTTGCCTCTTTGACGTCCCACTGTTAAACACCCTGCCTCTGCTCCATTGTTATTCCCCTAATAATGTCTAATTAATTCCTTCTAAACAAATTAGCCCCGCAGCTGCCCCGcgctgtttgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaatacTATCCACAAGCACCGACACCCTGGCGATATAACGTAGAGCTGATGAGGAATAaaggtgcatgtgtgtgtttacactgtACGCACACAGTAATGCTGTCAGCATGGTTTCAATATAAAATACAGGTTTTAATTCTGTCCCACTTTCAGatctgaaataaagaaaaatctaaGGACATGA

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250480 lncRNA upstream 8602 16933696 ~ 16956864 (+) True G184948
TU250341 lncRNA upstream 239074 16724877 ~ 16726392 (+) True G184851
TU250330 lncRNA upstream 279387 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 355086 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 449133 16501866 ~ 16516333 (+) False LOC120546561
TU250541 lncRNA downstream 146699 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 154435 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 154435 17288851 ~ 17291556 (+) False G184995
TU250579 lncRNA downstream 259118 17393534 ~ 17397048 (+) True G185022
XR_005636901.1 lncRNA downstream 295604 17430020 ~ 17447803 (+) True LOC120546618
XM_039782390.1 mRNA upstream 85131 16876319 ~ 16880335 (+) True fam228a
XM_039782392.1 mRNA upstream 85131 16876320 ~ 16880335 (+) False fam228a
XM_039782391.1 mRNA upstream 85131 16876321 ~ 16880335 (+) False fam228a
XM_039782388.1 mRNA upstream 85131 16876322 ~ 16880335 (+) False fam228a
XM_039781875.1 mRNA upstream 92358 16858208 ~ 16873108 (+) True gnpat2
XM_039781016.1 mRNA downstream 178058 17312474 ~ 17331367 (+) True ppp1r14c
XM_039781338.1 mRNA downstream 216775 17351191 ~ 17375059 (+) True map7b
XM_039781013.1 mRNA downstream 243766 17378182 ~ 17391719 (+) False mtfr2
XM_039781012.1 mRNA downstream 244549 17378965 ~ 17391719 (+) True mtfr2
XM_039781011.1 mRNA downstream 244549 17378965 ~ 17391719 (+) False mtfr2
TU250355 other upstream 132152 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 188865 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250012 other upstream 563363 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 997343 15914645 ~ 15968123 (+) False LOC120546249
XR_005636866.1 other upstream 1249182 15694944 ~ 15716284 (+) False dpf3
TU250543 other downstream 159238 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 207421 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 207421 17341837 ~ 17365977 (+) False map7b
TU250758 other downstream 534756 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 548142 17682558 ~ 17686398 (+) True G185145

Expression Profile