RNA id: XM_039781440.1


Basic Information

Item Value
RNA id XM_039781440.1
length 2248
RNA type mRNA
GC content 0.46
exon number 6
gene id lamp5
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14235279 ~ 14240598 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTGAGACTGCATGCCGAGTCCTTCCTTACAAGAGACAAACTCAGGTGACGGACTTTTTCCTTTCAAGAAGGATCTTTATTCCTGTTGGTAATGATGTGTAGAGGGAGCTCAGTCCTGCAGCTGTCACTGGGTTAAAACCCGTCAACCTTGGTGAGGGCGGTCGGTTTGGACAGCCAGAACCCCTCGGAACCGGCTGCTTCTGCAGAGCAAACCGGATCTCACGTCCAACCTGGAGACATTTTTTTGCTGCATTCACGATGATCTCAGCGTGACTACTGGGCGCTGAGTAGAggcatccctcctctctctcttttccatcTTCCTCTCCCGCCCCTCTCTGTCTTTAttcctctcttttcctttcGTGGGTTTAGCACAGGCTGCCCAGTCATTTAGTCCCCTTTTTTCTGCGCTGGGGAAGCTGATAGCAATGGGACGGCTcggtttcagcaccacggagaGCGCCCGGCTTCTGCTGCTCGTTGTGTTCgGTGTGCtggcgctgtccgtggtgctggcGGAGCAGGAAGGGGAGAACCTGTCCGGTCTCTCAGACAACCCAGACAAAGCCATCTTCGCGGTCCGGGAGAACGGCACGACATGCTTGATGGTGGAGTTCGCCGTGAGATTCCTTGTGCCATATGACGTGCTCGCGCTCAATGGGATAGACCTGATCACAGAGCAAGCGGCGTTCACTCTGCCCCGTGGTGCAGAAATCGAGGGGAAATGTGGGAGCACCGAGTCAGAGATCCAAATCACCTGGAAGAACAAGGCCTACACCCTCCGCATCTACTTCGACACGgAGTTCCGTGACAAGGGCATTGAGGTGTGGAAGATCAGCAAGATCCAGTTCGTCTATGACACCTCGGAGACATCGCATTTCACCAACGCGTATAACCCTGGGAAGCACACAGCCAACACCCACCACCTCTTGGCCCTGGTGACCCCTTTCGGGCGCTCCTATGTGTGTTCAGCGCAGCAGACTTTCACCCTCATCTCAAGCGACCACCAGAAGGGTGTCACAATCTCCATGTATGACACCCAGATCCAGCCCTTCGACATCGCCTCTGACTTCATATTCAGTGAACCCTACAAGTGCATCACTGACCAGCGGGAGCGCCTGGAAGAAACCCTCCCCCTCATTCTGGGTTTCATTTTGGCCCTCATAATCGTCATCACACTCACGGTCTACCACTTCCACCTGAAGCTGACAGCGAACCAGCCCCAGCTGCCCAGAGATCGCTCCATGTACAAGAACATGTAGCCAGCAGCAAGGCGGCAGCTCCCTCAGATCTCCCCAAAGCTAACCTGATAAAGACTTGTCTCCTCGATGTCCCAGGCCTAACACCACAGAGGAAAGTGCCATGCGATGGACTGAATCCCTGACAGAGAAATGTGTGTAGCCTGTACTGAAGGCCTACTGAAACTTTTGAACAGCTAAAACACAAGTTAATGGGACAGCTTGGGGCCTAGCATGGATGTAGTTGCAAACCCAATTTACCTGACTGCTGAATTGAATCTCAATGCCATAAATTCATAGTTGGTATTACACTAATTAGaattttaatgaaaataaaaacaaatgcttTTATGAAAATATGATTGATTTTGTTTGGATTGGTGGTTGTTAAGATTGGTGGATGTCATTTGAAAATCACCAACTTCAGGTTATAGTTCacctattattttttttctccataatgTTGTTTCAGCAAAATTTGATCCAACTTCTATTTGAAAGAAATTTCAGAAATTGCCAGAGCTTCTGCTGTCATTTGCCAACTGTTTGTtgtcttctcctctctttctctctctaaaaCTGCTGCTAAATAATTTCTGTTCTGTATTTCCTAATCTTGACATTTCTTGTTCAAGAATccctttaatttatttttttgaatgcAGCCATAGTGTTTTACAGTGGACAAGTCTTGTAGTGTGTGCAGTTTAGTGGCATTCAGAGTTGCAATGTTTTTGCTTTGAAATGTTTTCTCTACACCAATGTATGTAACATatcaaaaaaaaggaagaaagataTACATAAACATCTGACAAAACTTCTGTACTAAATACTGAAGAATTTATCAGAAGGCCATATGAGAGTGTTTATGAAAAGATAGGTTattaaattgaaaaaataatgtgTATAATATTTTCAGAATCAAAGTCTATGCATAAACCTCTGCTGATGCAATCTTGTGCAGTATTCTTCTgttcattaaaataaattgcTGGAATCATCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637034.1 lncRNA upstream 246623 13952385 ~ 13988656 (+) True LOC120547176
XR_005637035.1 lncRNA upstream 246623 13956925 ~ 13988656 (+) False LOC120547176
TU249355 lncRNA upstream 344363 13889301 ~ 13890916 (+) True G184128
TU249294 lncRNA upstream 761146 13468423 ~ 13474133 (+) False LOC120546706
TU249297 lncRNA upstream 774373 13458602 ~ 13460906 (+) False G184085
TU249492 lncRNA downstream 129526 14370124 ~ 14370768 (+) True G184235
TU249501 lncRNA downstream 181729 14422327 ~ 14424853 (+) False LOC120546619
TU249514 lncRNA downstream 236026 14476624 ~ 14565127 (+) True G184249
TU249531 lncRNA downstream 317944 14558542 ~ 14606665 (+) True G184263
TU249632 lncRNA downstream 415036 14655634 ~ 14656247 (+) True G184339
XM_039781439.1 mRNA upstream 288 14232278 ~ 14234991 (+) True LOC120546497
XM_039781330.1 mRNA upstream 6052 14144585 ~ 14229227 (+) True LOC120546405
XM_039781907.1 mRNA upstream 94510 14024485 ~ 14140769 (+) True LOC120546742
XM_039781908.1 mRNA upstream 94510 14024485 ~ 14140769 (+) False LOC120546742
XM_039781909.1 mRNA upstream 95388 14024484 ~ 14139891 (+) False LOC120546742
XM_039782364.1 mRNA downstream 89020 14329618 ~ 14335642 (+) False LOC120547018
XM_039782362.1 mRNA downstream 89020 14329618 ~ 14335642 (+) True LOC120547018
XM_039782365.1 mRNA downstream 89020 14329618 ~ 14335642 (+) False LOC120547018
XM_039782366.1 mRNA downstream 89020 14329618 ~ 14335642 (+) False LOC120547018
XM_039782361.1 mRNA downstream 90637 14331235 ~ 14335642 (+) False LOC120547018
XR_005636930.1 other upstream 113765 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 987863 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1085201 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 1226868 12990676 ~ 13008411 (+) True LOC120546167
XR_005637057.1 other upstream 3504497 10730505 ~ 10730782 (+) True LOC120547354
TU249487 other downstream 121743 14362341 ~ 14381187 (+) True G184231
TU249525 other downstream 284538 14525136 ~ 14529370 (+) True G184258
XR_005636833.1 other downstream 1049076 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 1061327 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 1419975 15660573 ~ 15663574 (+) True rhov

Expression Profile