RNA id: XM_039781448.1


Basic Information

Item Value
RNA id XM_039781448.1
length 3995
RNA type mRNA
GC content 0.44
exon number 9
gene id slc22a16
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19977864 ~ 19992886 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acctccaagtatacatgcgcctgctctacccactgatccaacccggccacactcACATATTTGAACTGACTTTTCCTATCCCAGCCAGCTAGCCCAGTCTCCTAactatcttttttttgtgatctttttttttgctgtgtaaaatattattattattattactgtagcAACATGCTCAGTAGTAAGTTGCTCTATTAATCAATCCAATCAAACCGTTGCAGATTTTTTGATTAACATTAACTTCAGAAGTTTTCTGGGATTAAACAGTTCTGACAGTGTATTAATTGCCATCATTTAGTAACACCTAGTTTAGTACTTCAAGACGATTACAAAAGAATCAATGAAATCTATCGAACTCTGTCACTTCTGGGAGATGTGCAGACAATCTCTACTGCCACCCAGTGGTTAGTCATGAACACTTATCACCTCCATGTGGAATAGATTACAACATAAAGTTAGTCTGTGAATGCCTGAAGGGATGTAAGTCAAATAGTAATTGAACTGGTAATGGTACTGAAAGCAATGAGAGGATTAGGAAAGAAGCCTGTTAAACTGACTGAAGATTCATGCAGACATTATTACATTAAGCAGTGCCATGATACATTCATGTTCTGTGATTTTAcacgtgtgtgcatgtacagtacagtgtgtAGCAATGTTTGCCTGAAGGTGATGCATGACTGTTTCTGTTTTGTGCTTGGACAGAAGACAAAGAAATCCAACTTTTGTGCTAAAAAAATGAGCAAAATTACTCGGAATGTCAGACACATGTTGTTTATCATACACAAAGAGAAactatgtttttgttgtggctTTTTCAGATTGAACACAGGagattttttctctctctgtagaCGGCATTTCACATACTGTAATGATTTGTCAGGATTTTGCCAAGATCTGCTGCCACATGGAATGCATTTGTGTTtggcctctcctctcctctcctctcctctccactccACTCCACTCCACTCCACTCCTAACTTTGCTCTCCTCCCCTCGACCAACATAAGGTCCAGAAAGTACAGATCATGTCTCCTTGATCTATTGGCTCAGTACAAATATTAGCTGATAATACCCATACTTAgtacaaaaaaaagtgtcagaGGCAAAGGACAAAAAGTAAATTGAGCCATGGGAATAAGGAGTGGAGGGTAGAGTGACACGACAATGAACACCGCAACTACAAGAAGaacaggAACAGCGACGTGGATAAACCTATTGCTTGTTGGGAAGCAACCAGTTGTGACAGGAGCAGCAGTCTTCCAGGCCATAGCCTGTGGGATCCACTACCTGGCCTCTGTCTTCTTAGTGCAGACGCCAAACTTTGTGTGCAGCGTGCCCGGCAACATCACCGATGTCCTATACGGTAACCTGACGGGATTTAGTTTGGAAGACATCCTGCCAATCTTCAAGTCAGACACTGGGCCCTTGGTGGTGAGGACGGCTGAAGGAGAACAGTGGGAGCTCAGCCGGTGCCGCTGCACCCTGCGCATTAACCCCAAAAACTTTACATACGACTTTGATGGAAACAAAACAGTGAAAGCCTGCGATGGGAACTTTGTTTACGACCTCACTGAAATTCACCAAAGCATAGTGACGGACTGGGACTTGGTTTGTGAGAACGAGTGGCTGGCCAAGATGTGCCAGCCCACCTTCATGCTGGGGGTACTGGTTGGAGCGCTGGTGTTTGGAGACATTGCTGACAGAGTTGGTCGTGTGAGGATCCTGATGTTCACCAGCCTCTGTCAGTTTGGGTTTGGGGTGTCTGTAGCATTTTCTGGAAACTATTATTTCTTTCTGGTGCTCCGCTTCCTCCTTGCCATGGTGTCTAGTGGCTACCTCGTGGTGGTCTTTGTCTACGTCACAGAGTTCACTGGCATCAAGGTGCGCACATGGACTTCTATGCACGTGCATGCTGCCTTTGCTGTCGGCATCATGGTGGTGGCTCTGACTGGTTACCTGGTGCGGGTCTGGTGGATCTACCAGATCATCCTCTCCACATGCACCTCGCCCTTCCTGCTCCTTTGCTGGAAGTTCCCTGAAACGCCTTTTTACTTGATGGCCAAGGGCCGCTACAAGGAAACTCAGACCCTGCTGGACGCGATAGCCCGCTTCAACGGCCTTGAATGCCGGCTGAAGGTGCAGGAGCTTCTGGaaccagaggagagagagaacggCAAAGCTCTGCTGGAGGAGGCAGAGCAGCGGCCATCGCAGTCTGAGAAGAAGCTGTCCATCCTGGATCTGTTTGGCAGCTGGAGGATGGCGAGCCGTACATGCACAGTGTGGGCCATCTGGTTCATCGGCAGCCTGGGCTACTACGTTTTCTCTTTGGGCTCAGTCAACCTAGGAGGAAACCAGTATGTTAACCTCTTCCTGGCTGGTGCAGTGGAGCTCCCCTCTTATTTGGTTGGCTGCTTTGCAATGGACCGGATTGGCAGGAAGAAGACTTGTGCCCCAGCTCTGCTCCTGGCCGGGGTCGCTTGTTTGCTCATCATTGTGGTACCTGCTGACATCGAGGCACTGGCCATCGCTCTCTGTATGACAGGGAAGTTTGCCATCGCCATTGCATTTGGTCTCATCTACCTGTACACCTGTGAGCTTTACCCAACCATCATCAGGTCTCTGGCAGTGGGTAGTGGTAGTACAATGTGCCGTGTTGGCAGTGTGGTGGCCCCCTTCTGCGTGTACCTGGCTGATGTCTGGACCTACCTACCTCAGCTCATCGTGGGAATCCTGGCATTCATTATCGGAGTGCTGACATTGTTGTTGCCTGAGACCCTGGGCAGACCTCTAACAACTACTTTGGAAGAGGCTGAAGCTCTGGGACGCGAGCCCAGCAAGAAGAACTCAGCCCTGGGCAATAAAGATGCTGAGGACAGGATGTAGGTGAACCAACATGAAGCCAAGGCCTGAATTGTATGCTACTGGAAAACCAGAGAGACTGACGCACAGAGAAGCTTTggacaaaaaagaaatgaaggaaagagagaggaggggacagCTGCCAAAAACTAAAATAGTAACAGCATTGATTTTGTGGCTTGttgaaaagaaatggaaaaatgtgatGTGTTTGTTGACATTTCTTCTGCAAGTGGCCAACATTTCAGTTATTTAAGGGTCCTGAGACATTACACAAACTGTGTATTATTATCTAAACTGCTTCAGTAGGTCAAAGTTGTACCACAAAATGTGATGGATGTTTACAAAGGACTGTTTGAGTGACAATTGAACTGTTtgcgtttgttttctttttcaaattagTATAGCtatcctgtttgttttttaaacgtgtATGATCTCAGCAATGAACTTTGTGAATACAACATTGTTGGTAGGACAGATCgctaaaactgcaaaaataagaCCTAAGTTGTATTAAActggaattatttttttaaaggaagtGAGCATGAGTATGCACTGTGATTTAGTTACTTCTCTGAAACAGTAATCATAAGTATAGAACATGGCTGGGCCTCTATTTCTGGAACATATAGTATTGAAGCATGCAGAGTATGTTTTTCTAAGTGCcttagttttcattttaaagtcacCGTTTTATTATCTTTaactctatttttatttttattttttaaatctcagGGCATCTAGTTTTAGATATCACTGTGAAATAATATAGAGTAATACTACATTACAATCATGGTCAAGAGTCAAGATGTGATCTCCAAATGTTTGGACCAAAGACAGGAATGATCCCTTACAGTGTGGAGATGTATTCACCTGCTTTGCAATGTTGTAGTACACTActaatatgtttttgtttcatgACAATCAACTGATATTCTAACAGTGACGACAAACAGTAGGTGACGAAAGTGCTCAGGTTCAGTATTCAATTCTGAACAGCTCTAGAATCAAGAGTATGATTTTTTGTATgaatagtttgttttatttctttatggacaaataaataaaatggccaaCACTGAGGTTGTTGGCCTCTTCTTTACTACACTTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636880.1 lncRNA upstream 4521 19950611 ~ 19973343 (+) True LOC120546509
TU251673 lncRNA upstream 126153 19850174 ~ 19851711 (+) True G185827
TU251641 lncRNA upstream 238574 19739040 ~ 19739290 (+) True G185804
TU251639 lncRNA upstream 239600 19737994 ~ 19738264 (+) True G185802
TU251637 lncRNA upstream 241808 19735840 ~ 19736056 (+) True G185800
XR_005636841.1 lncRNA downstream 268899 20261785 ~ 20359609 (+) False LOC120546242
XR_005636840.1 lncRNA downstream 268899 20261785 ~ 20288756 (+) False LOC120546242
XR_005636839.1 lncRNA downstream 268899 20261785 ~ 20286864 (+) True LOC120546242
TU251786 lncRNA downstream 268923 20261809 ~ 20288755 (+) False LOC120546242
XR_005636997.1 lncRNA downstream 633662 20626548 ~ 20628265 (+) True LOC120546929
XM_039781451.1 mRNA upstream 33833 19919473 ~ 19944031 (+) True cdc40
XM_039782594.1 mRNA upstream 117647 19852643 ~ 19860217 (+) True kif25
XM_039781136.1 mRNA upstream 140466 19834485 ~ 19837398 (+) True LOC120546286
XM_039781219.1 mRNA upstream 147021 19745177 ~ 19830843 (+) True fig4a
XM_039781220.1 mRNA upstream 175887 19745177 ~ 19801977 (+) False fig4a
XM_039782179.1 mRNA downstream 624364 20617250 ~ 20622631 (+) True LOC120546927
XM_039782178.1 mRNA downstream 624364 20617250 ~ 20622631 (+) False LOC120546927
XM_039782180.1 mRNA downstream 624588 20617474 ~ 20622631 (+) False LOC120546927
XM_039782183.1 mRNA downstream 635955 20628841 ~ 20638714 (+) True epm2a
XM_039782184.1 mRNA downstream 635956 20628842 ~ 20638714 (+) False epm2a
TU251678 other upstream 117659 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 329708 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 438556 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 1951857 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 1992893 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3585492 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3585492 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 4086717 24079603 ~ 24083104 (+) True G186975

Expression Profile