RNA id: XM_039781471.1


Basic Information

Item Value
RNA id XM_039781471.1
length 3608
RNA type mRNA
GC content 0.45
exon number 6
gene id chrna2b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18283900 ~ 18293835 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCACAGTGGATGATGCGGTTTTGCGGACCTAATAGACCAAAGTGGTCACTAAAAATGCTTCTAATTATGGAATAGAgctaatttaacattttaaatggtTATCGAAGTCTTAGATTAGGTCACAAAAGGATGCGTAAATTGGCACCGTGCGTAAAAGGGTGGAATTTGTTTGGATAATATATAGACAGCAACAAACCGGACTATTTTCCGTAAATTAATTTCTTGATACCGGATTTGTATAGGCAGTATTGAACTGGCACTTTAATCTGAAAATACACCAGAGGTAAGGTACGGCGTTACAGTGCCGCTGCCCGTTTCAGCACCGGATCATGGCTCACGGACACAGTGCGCGGACAGGCTTTTGGAGCGCGGAAACAAGAGGTGCATAATTACTCGCTCTCATTCAGTCTAAGCAGGGCTAAAGTGTGAAGAGTGACACACATACCCACTGTTGCAGAGTTTTAGGGAAAAGACAGTAAAGTTATTCATACAGAGTATTGTCCCCGCCCACAGATGTAAACGGGCTATAGCCTACAGTATGGTGAAGTTGTCCTGATATGACTCCCAACTGCGAAGATGACAGATTTTGCTCACAAATCACGATTTCAAGGTAACGTTTTGACAGCGGACGTAAACACCTCCGTGCTCTCCAGTGAAGTTGGACTCATTTTAAGCAGAGTCGAAAATGGGACAAAACAACCACCTGTTCTCTGTGAGGACGGCTATTCTCTGCTCGCTACTCTTGTGTCAGTCAGTTCTTTGTCATGAAAAGACCCACTCGCACGCTGAGGACGAGCTCTTCAAGACGCTGTTCGCTGGTTACAACAAGTGGTCGAGACCCGTGCCAAACATCTCTGACGTGGTCATTGTCAAATTCGGACTGTCCATAGCACAGCTCATTGATGTGgATGAGAAGAACCAAATGATGACAACCAATGTGTGGCTTAAACAGGAGTGGAATGACTACAAACTTCGCTGGAAACCATCCGACTATGATAATGTAACGTCCATAAGAGTGCCGTCAGAGCTCATATGGGTACCAGACATCGTCCTCTACAATAACGCTGACGGTGAGTTTGCTGTGACCCATATGACGAAAGCTCACCTATTCCACAACGGTAAAGTCCGCTGGGTCCCTCCTGCCATTTACAAGAGCTCCTGCAGCATCGACGTCACCTTCTTCCCCTTTGATCAACAGAACTGTAAAATGAAATTTGGCTCCTGGACGTACGACAAGGCCAAGATCGACCTGGAACGAACTGAAAACGTGGACCTGAACAACTACTGGGAGAGCGGCGAATGGGCCATCATCAACGCGGTGGGGACATACAATACAAAGAAATACGACTGCTGCCATGAGATCTACCCAGACATCACCTATTTTTTCATCATTCGAAGGCTTCCCTTGTTTTACACCATCAACCTCATCATCCCCTGTTTGTTGATCTCTTGCCTCACTGTTCTGGTTTTCTATCTACCCTCAGACTGTGGCGAGAAGATCACCCTGTGCATCTCTGTGCTGCTGTCCCTCACTGTTTTCCTTCTCCTCATCACTGAGATCATACCGTCCACATCCCTCGTCATCCCGCTCATCGGCGAGTACCTCCTCTTCACTATGATTTTCGTCACCCTCTCCATCGTCATCACTGTCTTTGTGCTCAACGTGCACCATCGCTCTCCAAGCACTCACAAGATGCCCCGCTGGGTCCACTTCGTGTTCCTGGACCTGATCCCACGCTGGCTGTTCATGCGACGGCCTGCGCCAGACGGCCGGCGTCACaggctgttgctgctgcagcaggAAGCAGCGGTGGAGCGGGGGCACGGCCGGATTGCCGGGTACAAATCTGGCAAGTGCCTCAGCACCTCTGTGAACTGGTTAAGAGATGGGACCACGACAGAAGACCCTCTGAGAAGCTCTTTTGAGGATTTAGAGCTGGGAACACTGACGTCATATTTCTCCTTCCGCCCTCCTTCGCCCAGACCACCAGGGTCGACTCCCCCACCACAACAGAAAACCCCACAGAACAGCCAGAACAGACAGGAGGGGGCTACAGTGACCAACAGACATTTAACAGGGGCCCGAGTTAATCCCACTCAGAGGCCAACTAAAATTGATAATACAGTATCAGACTCAACAATCCTGCTTTCACCAAATGTGTTACGTGCTCTGGAAGGGGTGCACTACATTGCAGACCATCTGAGGGCAGAGGATGCAGATTTCAGCGTGAAAGAGGATTGGAAGTATGTTGCCATGGTGATTGACCGCATCTTCCTGTGGATGTTCATTATTGTGTGCCTGCTTGGGACCATTGGCCTCTTCCTACCCCCTTGGCTAGCTGGCATGATCTAGCTCTTGTGAGAAGGTGTGAAAAATCCATAACCACCACTAGTTAGTGAAGTCTGACATTCACCATGTAGCTAAACTCTACTTCAGGACTCGGAATGTGACAAGTTTATGTAATATTGCTGCGTTAATGGCCTCATGAGGCTATGTTGCTCTTTTCACACCACCAAAAAGTTTGCTAATTTTAGATCCTTATAAAACTAGTGTGGCCATTTTGGCTCATCACTTGGATCAACCTTCATCTGTCTAAACTTTATCAGCCTCAGGTGAACTTCCCCTGCCTCAGCTGTAATGTGTCAGGTTTGACCtgaatgctaacattagcatgttaacaAGCCCAGGGTTGGAAATTGTTACATGCTAATGCTTAGCACAATGTAAGATTTGGCATTTTAGCATACAAATGTTAGTATGTTAACGTGCCAATGTTTAGTATATTGTCTCTTTAGCATGTTAGTTATCGTAACACGTTAGTTAAATAGCATGGCACCAGCATCAGTGTTGGGAATGGTGTTACAGTAATGTTATCACTTCTGTTGTTTGAGGAATTACAATTTAATATTCAGTTACCTAATTACATTTACTAGTAACGCTGGGATCAGTAACGCCATGGGTCTAGCTGTTAATGGACAGTAGCTAAATGGCTGCAATGGCTCGACTGGCTGCTCCACAAAGTGTGCAGGTGTGGCGGCTTTAGAGTCTAGGAACAAGAAATGTAACTAACTTAACTGCTAGTGTTTGGATACTAGTAAAGTAatgtgacttttcttttttcaattaCCAATAAGAAATCCCTTTCATTACATTTTCCAAGTAACTTGCCCACGTTGGTCAGCAGGTCTAAGCATACAGCTAATGCTGACAGGAATTCCCTCAGTACTTAGAGGTATCCAGTCATGACCTGGAATGTCAAGTGGAAACTTGGTGATTTTTGTTGAGAATAGTAAAGGTATAACCAAAGTCATTATGAATCATCATCTGGGGAATATTAATGAACCATGGCAAGCCATCCAAGTTGTCAATGTCATTCAAATGTTGGACTGACAGTGACATATGTTTCTcaactttctttgtttttgaccATCAGTGGCATGCTGTACTGGGAGTCTATAATATATTAGACACACTAACTGGGGTAATTTTTTGCTGGTTTGGGAATCATTTCTTACTTGTTTCAGATTTTTCTTTCTAGCCATGCTGCCATATAATTACAATGATTTTTGAATGATCATATTATGTAATAAATACCCTCATGAAA

Function

GO: NA

KEGG:

id description
K04804 CHRNA2; nicotinic acetylcholine receptor alpha-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251013 lncRNA upstream 101917 18181132 ~ 18181983 (+) True G185323
TU250953 lncRNA upstream 119246 18155970 ~ 18164654 (+) True LOC120546825
XR_005636952.1 lncRNA upstream 125459 18156123 ~ 18158441 (+) False LOC120546825
TU250952 lncRNA upstream 125792 18155970 ~ 18158108 (+) False LOC120546825
TU250941 lncRNA upstream 143681 18138893 ~ 18140219 (+) False znf513a
TU251049 lncRNA downstream 4028 18297863 ~ 18298151 (+) True G185353
TU251050 lncRNA downstream 5478 18299313 ~ 18300098 (+) True G185354
TU251052 lncRNA downstream 8345 18302180 ~ 18302519 (+) True G185356
TU251053 lncRNA downstream 8863 18302698 ~ 18302965 (+) True G185357
TU251055 lncRNA downstream 11419 18305254 ~ 18305577 (+) True G185359
XM_039781472.1 mRNA upstream 1198 18273829 ~ 18282702 (+) True si:ch211-142k18.1
XM_039781473.1 mRNA upstream 1198 18280266 ~ 18282702 (+) False si:ch211-142k18.1
XM_039781474.1 mRNA upstream 85397 18194483 ~ 18198503 (+) True nme6
XM_039782044.1 mRNA upstream 106796 18173169 ~ 18177104 (+) True atraid
XM_039782036.1 mRNA upstream 143640 18127131 ~ 18140260 (+) True znf513a
XM_039782508.1 mRNA downstream 53401 18347236 ~ 18358913 (+) True LOC120547097
XM_039782805.1 mRNA downstream 108237 18402072 ~ 18409077 (+) False zc3h14
XM_039782804.1 mRNA downstream 108238 18402073 ~ 18409077 (+) False zc3h14
XM_039782803.1 mRNA downstream 108239 18402074 ~ 18409077 (+) True zc3h14
XM_039781885.1 mRNA downstream 120177 18414012 ~ 18419160 (+) False batf
XR_005637008.1 other upstream 228974 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 231829 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 366652 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 597502 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 611014 17669172 ~ 17672886 (+) False G185145
unassigned_transcript_1081 other downstream 638481 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 910319 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 1135760 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 1135760 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 1135761 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile