RNA id: XM_039781549.1


Basic Information

Item Value
RNA id XM_039781549.1
length 3012
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC120546559
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16487014 ~ 16490639 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgctccagttttttttttttttttttaaagtaaatgaTGGAAGCCAGTCTGCTGGAAGCCGTTTGGATGGAGAGGATTTCTTATTAATGAGAAGGACAACATTTACTGGAAGTTTAAATTAATGTTTTCAGTGGGATGGGACTCAATCACTTCCTGTGTCTGCTGCTCTGTGCAGCAGCCCTGACAGTTTCTGGAGTTTTTGCTAAAGATGAGAACAGCGAGGCGAACAGGTGGGCCAGGCAGAGCCTCCCGGTgctgctggacacacacacggtgCCTTTAGACACCCCTTTGTTCACAGGGCAGCAGGAGgataaggagagaggagggacaaAGACACTCTGTGGAATAGAGTGTCAAAGTAGCCTACCACCTTTGGACCAGACTGAGCAAGAGAGGATTCTGGGATATGAGACAATGTATGAGAATGGCACTCGCACACATACAGATATCAGTTTGCAGGCTTTCAACAAGACGTCTGCAGGAGCACCAGCCCACTCACCAGCTCGCACTCGCAGGAAACGGCAGGTTTATGGAGCAGATGGACGCTTTGTGATCTCTGACTTGTATTTCATCACCAACTATCCCTTCTCTACCGCTGTTCGTCTCTCCACTGGCTGCTCTGGAGTCCTGATATCCCAGAAACACGTGCTAACAGCGGCACACTGCATCCATGATGGGAGGGACTACCTAGGGAGTGCCAGAAGGCTTAGAGTTGGGGTGTTGCAGCTCAAGACTAAAAGTAGAAGAGGGGgtaggaggagaggagggcggCGGAGGGCTGGGAGGAAAGAAGATGGTGAGGAGCAGGTAATGGAGGAAGGTGAGGAGCAGAATAGTATAGATGGAGATGTAGTGAGAAGGAGAAAGGGAGGCAAAGGCAGGAGACGCAGGGGAAGAAAAGAGGGTGAGGAGGGTGTAGCTGAGttagagagagaagggaaacaAAGAAGTCTCAGCCGTATAAAACGTAGTACTGAACCCCAGAAGCAGCCTGTCTTCCGTTGGACACGAGTCAAACAAACCAGAATCCCTCAAGGATGGATCCAAAACAAGAGCTCCACCAACTCAGTGTCCCCTGACTATGATTACGCTCTCCTGGAGCTGAAACGGCCCCTCAAACAAAAGTACATGGAGCTGGGAGTGGCGCCCTCTGCCACCCCCCTGACACGGATCCACTTCTCAGGCTATGACGCCGACAAAAGCCTGCTGGACGGGCGTGGAAATGAGAAGGTGGTTTACCGGTTTTGCTCGGTGGCAAACACGTCTGACGATTTGATGTACCAGCGCTGTGACGCTCAGCCGGGCGCCACGGGAGCAGGTGTTTACGTTCGTCTGAGGCAGGAAGTGGGAGAGGAAGGCAGGAAAGGGAAGTGGCAGCGGAGAGTGATTGGGGTGTTTACAGGCCATCAGTGGGTGGAGGTGGAGGGCGGTGAGCAGAGGGACTTTAATGTTGCAGTGAGGATTACTCCACCCAAATATGCCCAGATCTGTCACTGGATCCATGGAGATCCAAGTCTCTGCAAAGAGGTTTGACTGCAAAGCGAtggatctagaaaaatatttgtTGTCAGTTTCAAAGAGACTCAAAGATCTGGGCTGAGTGTACagtataaaactttttttttttaagtcttaaGAATGGTTCTGAACTTTGACTTATGACTTGAATTTATTTTAGTAAAAACTAGGACTTAGAAACTTTGTACAAAGAAGCTAACTTTTTAGCAAAGTATGAGTGTGAATCCTAAGTGCAGACTGAAGTGTTGTCAATTAAGGACTACAATCATGTCTTCCCAAAATGCACTTCCTGAAGCACTTCTGCTAAAAGCACGCCTCAAAAGGTTATATGTCATGGCTGCATCACAGCTTCATGCTTGATGCACACCTTgtcataattaattaataattatatatacgCCAAATATATTGCAGCCTGCAAGAAGAAAGCTTATAGAAGCATAATGACGATGTTAATAAGTGCTGTTTTGGGGTATTTTAAAAATCCTAAATGAGTTCATGAAGAACATAATAACCATTTTAAGACATACTTATCTGTGGAGGCACcatcaaatgttttttatatGAATTAAGTAAACGTTTAATAGTTTATTTCCCCcccgaaaaaaaaaagcacatcatTACTATCATGTCATTACATGTTGTATAAGAGTGTGGGTATTAGAACAGATGTATCTTTTATTAATTATCATCCTACATTTCCAAAATATGGAAAGTGTGTAACCACTGCCTCAGCTGGTCACTCCTAACTAATGTAGCAGACCTCTGGAGCTGTTTGGAGTAATtataaaaccaagtcttaacacTTAATATTATTCATACATGGCACTTATTCTTAAGTGTAAGAATAAGAACAAAATTACTGTAATTTTTGACACATTCAAGACCAAAATTTCACTCTGAGCAGCATCATACATACCAGCCCTGGAATTTTGATCGGAGTTTGTCAGGCAAATCTAAATCCAGGAATGCTGCACATGTCCATGGTTCTGGATCTGTGGCCTGTTCAGCCATTTATCAGTTCATTAAGAGGATATAGGCAATCCTTGTGAATGAGTCACAAAGggctaaaaaaaacatgagaaagtGTTTGAATTTGAGTTTCCTTGTCACCTTTTCTAAAAATCacatttgtttgtctgtctctgaaaTACCTAACGTACAGTATATAACTCTGAATctttaattatgtaaaaaaagaaaagacaaaacccTATTTTTTATCCTATGTTGCACAATGTAGACATTTTGCTTTGTTTAATTTTGTATCGAAACATACATAAGTGAAACCTGTTGGTCCTCATTTCACTTCATGTTAAAGGAATACTGGGTCCACACAACATATATACGTATTTTCTAATGTTTATAATATCTTGTATTGTaattttgtcttattttttaactgaaattgtcatgccacaAACATACTTTCTTGTCAAAAGAAAGAATTCATGctgacaacaaataaaaaagcagAACAGTAAGTGATAA

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250017 lncRNA upstream 73513 16411676 ~ 16413501 (+) True G184633
TU250010 lncRNA upstream 82937 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA upstream 82937 16402202 ~ 16404077 (+) False G184628
TU249989 lncRNA upstream 95163 16333055 ~ 16391851 (+) False nkain2
TU250006 lncRNA upstream 105233 16379507 ~ 16381781 (+) False cenpw
TU250220 lncRNA downstream 2555 16493194 ~ 16494494 (+) False LOC120546561
TU250223 lncRNA downstream 2555 16493194 ~ 16499974 (+) True LOC120546561
TU250222 lncRNA downstream 5318 16495957 ~ 16501887 (+) False LOC120546561
XR_005636882.1 lncRNA downstream 11227 16501866 ~ 16516333 (+) False LOC120546561
TU250247 lncRNA downstream 105301 16595940 ~ 16610380 (+) True G184796
XM_039782795.1 mRNA upstream 96384 16387758 ~ 16390630 (+) True LOC120547268
XM_039782793.1 mRNA upstream 100236 16384271 ~ 16386778 (+) True LOC120547267
XM_039782792.1 mRNA upstream 105158 16379479 ~ 16381856 (+) True cenpw
XM_039781848.1 mRNA upstream 111800 16357572 ~ 16375214 (+) False tpd52l1
XM_039782672.1 mRNA downstream 27805 16518444 ~ 16523666 (+) True pgm3
XM_039782618.1 mRNA downstream 37350 16527989 ~ 16534031 (+) True ccnc
XM_039782711.1 mRNA downstream 45672 16536311 ~ 16544495 (+) True faxca
XM_039782712.1 mRNA downstream 46176 16536815 ~ 16544495 (+) False faxca
XM_039781922.1 mRNA downstream 98211 16588850 ~ 16597991 (+) False tmem63a
TU250012 other upstream 84911 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 518891 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 770730 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 770730 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 823440 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 274906 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 335055 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 803015 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 851198 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 851198 17341837 ~ 17365977 (+) False map7b

Expression Profile