RNA id: XM_039781638.1


Basic Information

Item Value
RNA id XM_039781638.1
length 2683
RNA type mRNA
GC content 0.46
exon number 10
gene id sgk1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17560853 ~ 17596054 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAAAGGCATGATAGTTATATTTTAGCTGACAGGCAGTTGATGAGTACAGAGCTGCCGTTCAACTCATCACATCATGACGAtcaagacagagacagaaaagtcTGTCCTGACTTACTCCAAATCTAAAGGGCTAGTGGCATTAGTCACTGCTTTTATGAAACAGAGGAGAATGGGTCTGAACGACTTCATTCAGAGGCTTGCCACAAACTCCTACGCCTGCAAGCAccctGAAGTCCAGTCTATTCTGAACTTGAGTCCCCCTCAGGATGCTGAGCTCATGAACACAAACCCCTCTCCTCCTCCTAGTCCATCCCAACAGATCAACCTCGGTCCATCCTCCAACCCCTCGGCCAAACCCAGCGACTTCCACTTCCTCAAAGTGATCGGCAAGGGCAGCTTTGGCAAGGTCTTGCTCGCACGCCATCGTGCAGATGACGAGTTTTACGCAGTCAAAGTCCTACAGAAAAAGGCCATCCTCAAGAAGAAGGAGGAGAAACACATCATGTCAGAGAGGAATGTACTGCTAAAGAATGTCAAGCACCCGTTCTTGGTGGGCCTGCACTACTCTTTCCAAACAGCGGACAAACTCTACTTCATCTTGGACTACATCAATGGAGGAGAGCTGTTCTACCATCTACAGAGAGAGCGCTGCTTCCTCGAGCCCAGAGCCAGGTTCTACGCGGCAGAGATCGGCAGCGCACTGGGCTACCTCCACTCCCTCAACATAGTTTACAGAGACCTGAAGCCAGAGAACATCCTGCTGGACTCACAGGGACACATCATTCTTACAGATTTCGGCCTGTGCAAGGAGAACATTGAACCCAACGGGACCACGTCGACCTTCTGCGGTACGCCAGAGTATTTAGCTCCTGAGGTTCTACACAAGCAGCCGTATGACAGGACGGTAGACTGGTGGTGTTTAGGAGCTGTTCTCTATGAGATGCTCTATGGCTTGCCTCCGTTCTACAGCCGCAACACAGCAGAAATGTATGACAACATATTGAACAAGCCGCTGCAGTTGAAACCCAACATTTCCAATGCAGCCAGACACTTGCTGGAGGGCCTTCTGCAGAAGGACCGAACCAAGAGGCTGGGCTGCACAGACGACTTTATTGAAATTAAGAACCACATGTTCTTCTCCCCCATCAACTGGGATGACCTCAATGCCAAAAAGATCACCCCTCCCTTCAACCCCAACGTGACGGGACCCAACGACCTGCGGCACTTTGATCCAGAGTTCACAGACGAGCCGGTGCCCAACTCCATTGGTTGTTCCCCAGACAGCGCGCTCGCCACAGCCAGCATCAAAGAGGCTGCTGAGGCCTTTGTGGGCTTCTCCTATGCCCCGTCTATGGACTCTTATCTATAGTATTTAAACACAGGCACTCAATGGACTCCAGTTCAGACTTACAAGAACTGTGGCGTGTCCATGGACTTGCATCTTGACCCCACATTACATTTCCCGTCGGGATGATGGACAATCCCGAAGCAATGCCTGCAACAACTCTGCATCTGCAAAGAATTTAAACGTGTGTACTTGCCATGATCTCTCCAACTCTTGAAAGAAGACTTGCTACGAGAGGAAGCCTGCCATGATGAGATGATTCATTGGGGTTTGTAATCCTCCATCTTACCCTGATTTACCAACACACAAATACTTCAACCTTCCACAACAGACAGAGACGCTCTGCAGCCCTCAATTGCCCATCTCTTACCTGATAGTGGAGGTCCTTTGCACACAGCTCAGGCAGCTTTATAGCCTCCCTCGACCCTAAAGCCACAACtgacaagcacacacaccaACTTCCACCTTTTCTCAAAAGAGGAAGGCTGGACCGTACCGTACCAGCCCTGACAAGGATTTCCATCTTCATCGATGTAGCGAATCATCTTCCCtcttttgtgtttctgtctaACAACCCACAGGGGACCTACCTGTTGTGTTTGAATAAGTAGCTTGGAGATGACATTTATTTTGGTGctttagttttttattatttacttaCTGTCTGTGTGGTTGAACAAGGGAGTCATGTGATGCTGAATGTTACAGAGGGGGATGATAAAAAATGTTTCTCTCAAAGgtgccttttatttttttctctccatcagaACTCACATCTTTTGGGTTTCTCTGCGTCAACCTTAAGGTCACCGCGTTTCATTTAGCTCATTTTAGGGAGAGCAGCTGTTTTGAGAGGAACGACGTAGCACCAAATTAACACACCTGTTCTGGCTTTAACACGCGGGACGTAAAGAAACTCAAACGATGTTTCATATCTTCATTTGCACATACAACAATAGtggtgatagagagagagaaagagagagcacagctgctaggtgagaaagagagTGATGTTTGTGTAGTTCTGCTTGCCAACTGTGTCCCCCTCATATACAGTAGTCTTCCATTCGTCTCACAATAGTAAGCCGACAACATCGAAACTGAACATTCCATTTTAATATTGCTGTAATGCAGTTTGACGGTATTTAAGTTTGTTTGTATATTTGGAGTTATGTGTACTAGATTTAATGTATATTGAACAAGAAATGACTAAAGGTATGCctaaatatgtatatgtaacaATTCATgttaaatgtactgtaaattGTAAAATTGTTTAAGATTTATGTGACCATGTTTGGTTTGCAAtaaaagtttaactttattacACCTTA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250710 lncRNA upstream 37537 17553442 ~ 17553909 (+) True G185112
TU250704 lncRNA upstream 40341 17550558 ~ 17551105 (+) True G185107
TU250700 lncRNA upstream 43157 17535854 ~ 17548289 (+) True G185103
TU250659 lncRNA upstream 121871 17468552 ~ 17469575 (+) True G185067
TU250650 lncRNA upstream 138384 17451766 ~ 17453062 (+) False LOC120546214
TU250737 lncRNA downstream 37065 17633119 ~ 17667720 (+) True G185134
XR_005636848.1 lncRNA downstream 40898 17636952 ~ 17654361 (+) True LOC120546270
TU250739 lncRNA downstream 44907 17640961 ~ 17661813 (+) True G185136
XR_005637003.1 lncRNA downstream 73112 17669166 ~ 17671477 (+) True LOC120546942
TU250765 lncRNA downstream 80671 17676725 ~ 17693634 (+) False LOC120546940
XM_039781170.1 mRNA upstream 75863 17506954 ~ 17515583 (+) True aldh8a1
XM_039781168.1 mRNA upstream 86572 17480212 ~ 17504874 (+) True hbs1l
XM_039781169.1 mRNA upstream 105850 17480198 ~ 17485596 (+) False hbs1l
XM_039781679.1 mRNA upstream 161444 17407774 ~ 17430002 (+) False LOC120546616
XM_039782079.1 mRNA downstream 19275 17615329 ~ 17623112 (+) True slc2a12
XM_039782082.1 mRNA downstream 19280 17615334 ~ 17621600 (+) False slc2a12
XM_039782083.1 mRNA downstream 19280 17615334 ~ 17619881 (+) False slc2a12
XM_039782080.1 mRNA downstream 19288 17615342 ~ 17623112 (+) False slc2a12
XM_039781107.1 mRNA downstream 56448 17652502 ~ 17654361 (+) True tcf21
TU250558 other upstream 225469 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 225469 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 295745 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 758132 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 814845 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 73118 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 86504 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 320799 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 424909 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 424909 18020963 ~ 18052071 (+) False fndc4a

Expression Profile