RNA id: XM_039781673.1


Basic Information

Item Value
RNA id XM_039781673.1
length 1683
RNA type mRNA
GC content 0.46
exon number 12
gene id smyd2b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19260262 ~ 19269398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCATGTTGTGAGTGAAAGGTCATTTTGAAGGAAGACAACCCGAAGGAGGCACTATGATGGGCAGCATCGAGGGACTTGAGAGGTTTGACAGTCCTGGTAAAGGCCGAGGTCTCCGCGTTACCAGACCCTTTAAAGTTGGAGAGTTGCTGTTTTCCAGCCCGGCGTACTCTTTTGTGCTGTCACTATCAGAGAGAGGCTGCTACTGCGAGTTCTGCTTTACCAGGAAAGAGGGCTTGGCAAGATGTGGAAAGTGCAAGAAAGCCTTCTACTGCGGTGTGAAATGCCAGAAAGGGGACTGGGCCATGCACAAGCTGGAATGCTCTGCAATGACTGCATTCGGAGAGAACTGGTGCCCGTCAGAGATGTCCCGCCTGGTGGCCCGGATCCTcgccaagaagaaaatgcagaaagaaAGATGTGCTTCTGAGAGGATCTTGCTCATAGAAGAGATCCAATCACACGTGGAGGATGTAGACAATGAGAAAAGAGAGATGACTGAGTCAGATATTGCCGGACTGCATCGCTTTTTCTCCAAACATTTGGAGTTGCCCGACCATAAAGACCTTCTCACACTCTTCTCCCagGTTGCCTGTAATGGTTTCACTATAGAGGATGATGAACTGTCCCACATGGGTACTGCAATCTACCCAGATGTGGCACTGATAAACCACAGCTGTCTTCCCAGTGTCATAGTCACATATAAGGGGACGTCTGCTGAGGTTCGAGCAGTGAAGAACATGAATCCTGGAGATGAAGTGCTCATCAGCTACATAGATCTCCTCTATCCAACAGACGACCGTAACAACAGGCTGAGAGAGTTCTATTATTTCACCTGTCAATGCCAGGAATGCAAAACCAAGTCCAGTGACAAGGCAAAGTTGAAAGTGCGTAAGCAGAGTGACCCCATCGAGCAAGAGGTCATCAGCAACATGGTGCGCTATGCCAGGAAAACCATCAGAGAGTTCCGGGCCCTCAAACGCATAAAAACCCCTAGTGAGTTGCTGGAGATGTGTGAACAGAGCCTGGATGAGATGGGTGCTGTCTTTGATGACGCCAATGTCTACATGCTTCACATGATGTACCAGGCCATGGGGGTTTGTCTCTACATGCAAGATCCAGACGGAGCTATCAGATACGGCGAGAAGATCATCAAACCTTACAGCAAGCTGTATCCACCCTACTCTTTGAATGTGTCCTCCATGTACCTCAAGTTGGGCAGACTGTACATGGGGCTGGAGAGGTACTCAGTGGGCATCAGCGCTCTCAAGAAGGCAATGGCCATAATGGAAGTGGCTCATGGGAGGGATCACCTCTACTTGACAGAGTTGCACAAAGAGATGACACGAAAATGATgagaaaggaaagaaatgaTGTTGAACACAGCTGATCCGAAGCGACTGCAAACACTCCTTTGATTAGGAGCTTCACAGAACTGAAGAAACATTCTACTCTTTTTGATACTGAAGCAAAGATAGAGAGCATTCATGGTTTTTATGCAAAGTTttgtgcaacaaaaatatttttggatATTAAACTTTTTACAACAGTGTGATGTATGCAAGAACCTATTAGTTTGTTGGATGCAGGATACTTTTGTACCAAGCGTGCATTTAATGTTCAGTTATATGCAAATGTGAAAGTCTGACATTGTAAACAGTGCTTTTTACTCATGTTGACCATAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251378 lncRNA upstream 176478 19082696 ~ 19083784 (+) True G185599
TU251371 lncRNA upstream 214155 19045414 ~ 19046107 (+) True G185593
TU251370 lncRNA upstream 216714 19043224 ~ 19043548 (+) True G185592
TU251369 lncRNA upstream 235684 19024264 ~ 19024578 (+) True G185591
TU251368 lncRNA upstream 237232 19022696 ~ 19023030 (+) True G185590
TU251440 lncRNA downstream 8709 19278107 ~ 19279357 (+) True G185656
TU251470 lncRNA downstream 85218 19354616 ~ 19427463 (+) False acbd3
TU251479 lncRNA downstream 98655 19368053 ~ 19373933 (+) False si:dkey-206f10.1
TU251505 lncRNA downstream 283876 19553274 ~ 19554235 (+) True G185696
TU251494 lncRNA downstream 303202 19572600 ~ 19576899 (+) True zgc:193593
XM_039781692.1 mRNA upstream 23229 19204359 ~ 19237033 (+) True LOC120546624
XM_039781693.1 mRNA upstream 23229 19204708 ~ 19237033 (+) False LOC120546624
XM_039781341.1 mRNA upstream 133603 19102583 ~ 19126659 (+) True rps6kc1
XM_039782387.1 mRNA upstream 157842 19097059 ~ 19102420 (+) True moxd1l
XM_039781706.1 mRNA upstream 183780 19070669 ~ 19076482 (+) True si:ch211-203k16.3
XM_039781031.1 mRNA downstream 58609 19328007 ~ 19333616 (+) True LOC120546239
XM_039781026.1 mRNA downstream 98322 19367720 ~ 19389223 (+) False si:dkey-206f10.1
XM_039781024.1 mRNA downstream 98591 19367989 ~ 19389223 (+) False si:dkey-206f10.1
XM_039781028.1 mRNA downstream 98592 19367990 ~ 19389223 (+) False si:dkey-206f10.1
XM_039781023.1 mRNA downstream 103260 19372658 ~ 19389223 (+) True si:dkey-206f10.1
TU251420 other upstream 52166 19204154 ~ 19208096 (+) False LOC120546624
unassigned_transcript_1081 other upstream 327875 18932316 ~ 18932387 (+) True trnae-cuc_27
XR_005637008.1 other upstream 1205336 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 1208191 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 1343014 17916853 ~ 17917248 (+) True G185237
XR_005636888.1 other downstream 160197 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 160197 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 160198 19429596 ~ 19539208 (+) False nhsl1b
TU251521 other downstream 364885 19634283 ~ 19648156 (+) False acp1
TU251678 other downstream 587337 19856735 ~ 19860205 (+) False kif25

Expression Profile