RNA id: XM_039781678.1


Basic Information

Item Value
RNA id XM_039781678.1
length 3108
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC120546616
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17407774 ~ 17430002 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTGGTCAGCTGTTGGTGTAGCAAGAACAAGATAGCACAACTGAGCTCCGAGTGGGGAGAGGAGGGGCTTTTAGACTCCACAACAACACCGGTGTGAGTGAGACtgtagagaggagagagaatgcGGCAGAAGGAGGGAGCAGACCGACAGTGGCTGACTctgggagagagatagagacggATTTTCACTTCTCTTCATTGGCTTTTCCCTGCTTCTTTTCTCTGcacttgttttgtcttttttatcgCTCTGCAGCCATTTgctctcagtctctctgtccctctttctttcctgcTGCTGATTCTGTCTCTCCCTGCAGCCTTTACTCCTCTGTCCAACATTCTGACTTGCTActatctgtctgtttgtcctCCTTCTCACCTATGGCTACCTGATAGTCAACTTCCTCTCCTACTCTCTTTTTCACAACcatccttttttctctctccttcctcagtTTCACCCATGTCTTTACTTTGATCTTTCCTTTCCTTGCACTGGTCTGTCACCTATCTGTTGTTTTTTGGTGTGAGGATGCCAGTACTGGATGGGTTCTGGGGCCCAGATCTCAGGATGCGGGACTCCGGTCTTGGCGTTGAGGTTGAAGTTGGGGTCTGTCCAGACGAGGCTCCCCGCTCGCCAGTCTGGGGGTCTCTCAGGACGCCTCCTATTACCTGTGGGGGCCTGTCATTGGCCCTGGAGCTTCCGGCTCTCATACGGCAGCTCAGGGCAGCCTGGAGGGCTCGCAGAGGAGGCTCCCGGGGGCCCGAGAGAAGTCAGGCGAGCACTTGGGTGGAATCAGAGAAGGAAGAGGTAGAGGAGGTGAAGCATGACGTAGAGGACAGAAGCGGTCATCTGAAAGCTGATGGCAGACTGAACACTGGTCATGCTGGTGTGCTGCTGGTTGAGAGACGAGGCTCCTACCCACTGATTGACCTGCGAATCCTAAAAACCAGTGCCCAGCAGGGGGAGATAGAGGCCGGCACCAGGAGAAAGGTGAAGCGTCTGCTGAGCTTTCAGAGATACTGCCATGCCTCCAGGCTGCTCAGGGGGTTGGTGCCCCACACCCCCGGGTCACTACACCTACTAGATGACGAGTACCTGGGACAAGCTGCACACATGTTATCAAAAGTAGGCAAATGGAACTTTGACATTTTCCTCTTTGATCATCTTACAAATGGTAACAGCCTGGTGACTCTGATGTGCCATCTCTTCAACGTCTACGATCTCGTTCACCACTTCCAGCTGGACATGATCAAACTGCACAGGTTTCTCAGCATGGTGCAAGAGGACTACCACTCCCAGAATCCCTATCACAATGCTGTTCATGCTGCTGATGTCACCCAAGCCATGTACTGCTACCTGAAGGAGCCCAAGCTGGCAGAGCAGCTGAGTCCTCTGGACGTGTTCCTGGGTCTGATGGCAGCCGCCACCCACGACGTTGACCATCCTGGAGTCAACCAGCCCTTCCTCATTAAGACCAGACACCACCTGGCATCTCTCTACCAGAACACGTCTGTGCTGGAGAGTCACCACTGGAGATCCACTGTAGGCATGCTGCGAGAGTCACGACTGCTGTCCCACTTGCCTGCTGTCATGCAGGACATGGAACAGCAGCTGGGCTCTCTCATCCTGGCTACAGACATCAGCAGGCAGAATGAGTTCCTGTCAACCTTCAGAGAACATCTGAACAACCAGGACCTGGACCTTCAGCTTGCTTCTCACAGGCACTTTATACTGCAGATTGCTCTGAAGTGTGCAGATGTCTGTAATCCATGTCGATTTTGGGAGCTGAGCAAACAGTGGAGTGAGAGGGTGTGTGAGGAGTTCTACAGGCAGGGTGACCTGGAAAGAAAGTTTGACTTTGAGATTAGTCCTCAGTGTAACCAGCAGGCTGACTCTGTCCCAGCCATTCAGATAGGATTCATCTCCTACATCGTGGAGCCTCTGTTTGAGGAGTGGCACCGCTTCACCGAGCCCAGCGTGCTCAGTCAGAACATGATGGGTCACCTGTACAAGAACAAGGCCCGCTGGAGCCGCCTACGATACGCACACACGCCGTCAGACACCGAAACTCACTCCCATGCCGAGGAgcccggaggaggaggaggagagggtggaGACATTTCTTAATCTATCTCTCATTTCTCGAGGTATTTGATCTTCCTTTTGTAAACAGGAGTGGAGTGTTTATCCACCTCCTTGTTTGTCCTCCAGCATATTTTCTCCAACTGACGGTGGTTTACAGGCTCTAAACAAGGGAGCATTGGATGGGAGTCTGGCTTCAATTCATGAGAGATGGCTCCCTCTCCTGGAGCGGAGGACCGTAGCCCTGCAGGGGGGAAAAAGAAGATGGAGAGAGATTCATGCTAGGGCAGATGGATGGATAATCTTAGTAAATATGCCAATTTGACAAAGTCATGCCTTTACCACAGTGGTATCTGCTGCAAAGTATCTGAGAAAAGCATGAAATTAAAAGGTTAGCTGAAAGCAGAAGAGGGATCAGTGAAGACAAGttttaatgtgtttgcacaATTCTGCTAGAAcaacaaagaaatgaaaaagtCAGCTGGACTGTGCTGGAAAAGATGACGAAAATAtatgaaagaaaaatatatcCACTATACTATAAGTTTTAAACTTTTAGACAATACATACTGTATTAAGCTCTTTacacttttttctctttttttgtacaGCTTGCACTTCTATTGGATACTCACTAACTTACTCACGTTTTTAACTCACTAAGTTGGTACTATAACAATGTATTCTCTTTGAACTGTGTAAGACTGACTGAACTGACCGACATAAAATGGCTACAGCTGGTGTCGCTCAGTTGCTTAACGCTGATAGTCAGCTGGATGTTTTTGGACTCACCGATGTGGAGAATGCAAATCGGAGCAGTTTtccacagtgtttgtgttcaTGTAGTCTTTagccacaacgttccacttccgggatcgcTCCCGTGCCCCGGAAATTCTGACGGAattcttttcggccagatgtccgctttctctgtgttggaattttaaactctggtggatttatgaggactatagttaactgcttctcagatcgctccagggtaaatccagacag

Function

GO: NA

KEGG:

id description
K18436 PDE7; high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250579 lncRNA upstream 18875 17393534 ~ 17397048 (+) True G185022
TU250541 lncRNA upstream 116503 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA upstream 123648 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA upstream 124367 17288851 ~ 17291556 (+) False G184995
TU250480 lncRNA upstream 459059 16933696 ~ 16956864 (+) True G184948
XR_005636901.1 lncRNA downstream 18 17430020 ~ 17447803 (+) True LOC120546618
TU250569 lncRNA downstream 8687 17438689 ~ 17440600 (+) True G185015
TU250565 lncRNA downstream 11139 17441141 ~ 17447316 (+) False LOC120546618
XR_005636900.1 lncRNA downstream 12427 17442429 ~ 17447803 (+) False LOC120546618
XR_005636836.1 lncRNA downstream 19528 17449530 ~ 17453062 (+) True LOC120546214
XM_039781013.1 mRNA upstream 24204 17378182 ~ 17391719 (+) False mtfr2
XM_039781012.1 mRNA upstream 24204 17378965 ~ 17391719 (+) True mtfr2
XM_039781011.1 mRNA upstream 24204 17378965 ~ 17391719 (+) False mtfr2
XM_039781338.1 mRNA upstream 40864 17351191 ~ 17375059 (+) True map7b
XM_039781016.1 mRNA upstream 84556 17312474 ~ 17331367 (+) True ppp1r14c
XM_039781169.1 mRNA downstream 50196 17480198 ~ 17485596 (+) False hbs1l
XM_039781168.1 mRNA downstream 50210 17480212 ~ 17504874 (+) True hbs1l
XM_039781170.1 mRNA downstream 76952 17506954 ~ 17515583 (+) True aldh8a1
XM_039781637.1 mRNA downstream 130851 17560853 ~ 17596054 (+) True sgk1
XM_039781639.1 mRNA downstream 157788 17587790 ~ 17596054 (+) False sgk1
TU250558 other upstream 49946 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 49946 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 120222 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 582609 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 639322 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 239170 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 252556 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 486851 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 590961 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 590961 18020963 ~ 18052071 (+) False fndc4a

Expression Profile