RNA id: XM_039781688.1


Basic Information

Item Value
RNA id XM_039781688.1
length 1879
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC120546620
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14427564 ~ 14439516 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTACTCATCGTTTCCTCCTCAGAGCAGTAGCTTATCTTTCCGGGAGTTATTTTGGGGCCTTTAATGTGAAGATGTTTTCCCTGTGTGAGGCCTCCCTGACCCCTGTCGACACACTGGAGCACTCTCTCGCACACATTCTTACTTGTCCTCCTCTGAGCTTCAGATGGCTTACCAGGTCCTTAATCTGTCCTCTGAGTGAcatccccccctctccctgcaCCCTGCACACACTCCTGGCAGGACagcagaggggagagggagggacgGATAGCAATAGGTGGTGGCCTCTGGTGGTTTAGTGAAGGTGAACTAACCCAGCAGTGAAGCGTAGGAGACATAGCAGGAGCACGCTCCGACACTCTCTGTCAGGGCCATGGCAGCAGGCATAgaggagggacacacacacatggaggagCTGGTGGACCAGGGCCTGGGGATGGAGGAGACGGCCCACGGCCTGCTGGGGAGGCCCTCGCTGAAGGAGAACTACAACAGTGACTGCCTGCTGGCACCTGACACTGACTTCATGACAGATGACCGCAGCTCGGCAGCCAGTGGCCTGGACGTGGCCGACCGGCTGACCTACCTGGAGCAGAGGATGCAGATGCAGGAAGATGAAATCCAGCTGTTGAAGATGGCTCTGGCTGATGTCCTCAAGAGGCTCAACATATCTGAGGAGCACCAAGCAGCTGCTGCCTCTGGTGCTGTTAGGAGACCATCAGGCGTTAAAGCCCGGCCAGTGTCTCTACTTCTGCCCTCCAAACCGCCTATGGTGATCTCCAGCACTGCCTCCCTGAAGAAGAGCTCCACGCTGCCCTCCAGCGTCCCAGCCAAGAACTACAGCCCAACACCGCCCGGCAGtGGTGTGAAGAGCCCCCCGGGTAGTGTGAAGGACAGTCCATGCAAGACCGCTAAACGACTCACCTCTGCAGCCTCCACCTGTAAGAAACCTCCGGAAGGCAAGTCCAAGGAGAGTGCAGTAAGTGTCGGGACAAGGCGTGTGACACACTGCAAAGTGACTATGCAGATCTATCTGAGCCCCCTCACAAGAAAGACTGGATCTTCTGAGACCGCCAAATCCCCCGCCGCTGTGCCTGCCAACAGAGGGCCCACGGCCACACCTAACAACCCTCAGGCAAGGGGGGGCAGCAAGCTAGAGGGAAAGAAGACGACCCCGTCCTTCACCTTAAACCTGCAGAAAACCACAACCAGCCAGAGCACAGCGCAGGACACATCCAGCTACAAGAGCCCCCTCAAATCACCCAGCCAGTACTTTCAGATTTGTTACTGAGGGTAGAGATAGATTTTCTACACCTTTGTCCGTGCTATCAATCACTTGAACAGAAACTGTGAATAAAGACTTTCTTCCATTGTTGATAAAAAAGAGAATCTGATTTTAAAATGGGGATGAGTGCACTTCTGACACGATTTACCTCTTTAGTGCATCCTGACTTTGTTGCTTTTGGGTATGTGTACAGCATTTCAAAACATTTCCAAGTTTGAGTAACTGTGAATAGTGCTTTATGGCATGgctatttattaaaatgataGTACCGTTTGAGagcttaaatgtatttttagccTCCTCTAAGACCACAGCAGGCATAGATCCAGTTctcactgctgtgtgtgtaaacattttctttgtcattctATATGTGAATTTTGTAAAGCAAGGATGTGTCTGTAGTTTTCATTCAGCACTGACTGTGTTTGATGTCACTGAGTCCGTCTCATTCCTGTGTgctgtgatgtttcctgttgttTTGTAGTTAATGTTACACTTTCAGTATAACTTAAGTACAGAGTGTACCAgaatcagtaaaaaaaaaggctcaTTCTAGTTCaggacaaaaaataaaagaactATGATCACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249501 lncRNA upstream 2712 14422327 ~ 14424853 (+) False LOC120546619
TU249492 lncRNA upstream 56797 14370124 ~ 14370768 (+) True G184235
XR_005637034.1 lncRNA upstream 438909 13952385 ~ 13988656 (+) True LOC120547176
XR_005637035.1 lncRNA upstream 438909 13956925 ~ 13988656 (+) False LOC120547176
TU249355 lncRNA upstream 536649 13889301 ~ 13890916 (+) True G184128
TU249514 lncRNA downstream 37108 14476624 ~ 14565127 (+) True G184249
TU249531 lncRNA downstream 119026 14558542 ~ 14606665 (+) True G184263
TU249632 lncRNA downstream 216118 14655634 ~ 14656247 (+) True G184339
TU249634 lncRNA downstream 220803 14660319 ~ 14660735 (+) True G184341
TU249635 lncRNA downstream 221230 14660746 ~ 14661130 (+) True G184342
XM_039781682.1 mRNA upstream 2701 14393440 ~ 14424864 (+) True LOC120546619
XM_039781684.1 mRNA upstream 2701 14395098 ~ 14424864 (+) False LOC120546619
XM_039781683.1 mRNA upstream 2701 14408931 ~ 14424864 (+) False LOC120546619
XM_039781681.1 mRNA upstream 2701 14408943 ~ 14424864 (+) False LOC120546619
XM_039782363.1 mRNA upstream 92402 14331235 ~ 14335163 (+) False LOC120547018
XM_039782583.1 mRNA downstream 2677 14442193 ~ 14493620 (+) False evlb
XM_039782582.1 mRNA downstream 15793 14455309 ~ 14493620 (+) False evlb
XM_039782581.1 mRNA downstream 15794 14455310 ~ 14493620 (+) True evlb
XM_039782354.1 mRNA downstream 55253 14494769 ~ 14500520 (+) True yy1b
XM_039782355.1 mRNA downstream 55254 14494770 ~ 14500520 (+) False yy1b
TU249487 other upstream 46378 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 306051 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1180149 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1277487 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 1419154 12990676 ~ 13008411 (+) True LOC120546167
TU249525 other downstream 85620 14525136 ~ 14529370 (+) True G184258
XR_005636833.1 other downstream 850158 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 862409 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 1221057 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 1255428 15694944 ~ 15716284 (+) False dpf3

Expression Profile