RNA id: XM_039781850.1


Basic Information

Item Value
RNA id XM_039781850.1
length 3070
RNA type mRNA
GC content 0.40
exon number 10
gene id tpd52l1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16357559 ~ 16375214 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAAACCCGAGTAAAAGCACACTGACCTAACGGCCCCGGTGCTACGCGTGCTGCCgtgtcttgtcttgtttcaGGAGATTATTTGGGAAGTTCACCTGGCTGTCGCTGATGGAGACTAGACAACAAGAGAGAGGACACCTCACAGCAGGTTTCCTGGACTCTGAGCCATTGAGAGAGGCTGATGAAGATATGGCCTCAGAAGTCAACCTAAACAACTCCATCATGacggaggaggagagagaggagattcAGCAAGAGTTAGCTAAActggaggaggagatcAGTACGTTGAAGCAGGTTTTGTCGTCCAAAGAGAAGCAGCACGCAGAGCTCAAACAGAAGCTGGGCGCGACTTCTCTGTACGAGCTCAGGAACAACCTCAGTAGAGGCTGGCACGACATGCAGACCTCCACGGCCTATAAGAAGACATCCGAGACGCTGTCCACAGCAGGACAGAAAACCTCAGCCGCCTTCAGCACACTGGGCAGCGCCATCACCAGGAAGTTCGGGGACATGAGTCAACACAACACAAGTGTGTCCAACTCTATAGGCTACTCTATCAGACACTCTATGAGCATGCCCACCATGAGAAACTCTCCCAGCTTCAAGTCTTTTGAGGAGAAAGTCGAGACTACAGTGTCCACCATCAAGACAAAGGTTGGGGGTACAGGGACCGCAGGCAGCTTTGAGGAAGTCCTCTCCTCCGCAGCAAATGCCAGCTCTCAAGACACGCCCACTATCAACTTGACGGACAGCTCTGAGAGGCCGTGTTAGAGCTGCGTCCACACGGTGAGGCGGGACTTAAACCAGGAACTGCTGTGTTGCAGCACTTTTGTCACATAACTTCTCAATGCTCTGACTGAAATTTTACAGAATACCTTCATTTGATCGAACGTGTTAAGATGCTTTTGTAAACCATGTTTGTGATTAAATCTCTTAACACTTGCATGGAATTTCCTGCAAACCCTAAATGCCTAGACTtaatcaaaaagttacgcaatTTCTTGTTTGGCCCAAATTTACTCAAAATATTCTAAAGCAGCAGTTGtctaccttttttattttgaaagctcAAGACAGCTGACGTCAAAAGCACACCTACCTGGTAGAGGGCTGATAAACCCAGTGAGCCACtcagattgttgttgttgttgttgttattattttattattaaactgGGTTTAAAGGAAGAATCTGTCGACAACCTAGATTATTTTATGAATGTTACCAAGAGATCAGAGCATGTTGGTCTTTTtgttggactttttttttcagtgtcgTGGATTTAACCAATGAGACAACAAATGTCACCTGCCTCTGGTGACCTCCACACCATGTTAAACCACAGTGGTCGATCACATGGGGGTTGAAGCGGAGACACAGCTAAGCCTTAGTTAAAAAATGAGAATGCACAGATTCCAGACAAAAGCAAAAACCCTGTATTTCTGCTGTCACTTAAGTTGAGCGCCTCGTGGTTTGGCTCACGTAGTCACCCTCTCAACACGAGTGGAAAAACCGAATCACAGCTGGAATTCCTCAGACACAAAATAAGAGGTTATTGATGCCTTCTTTTGTTGTGTAAATTCGACATAAGTGGAAACAGCCATGTTGGTACATTATCACAACTCTACATTACTAGAACTTTCATACCAAAAACTACATTTTTAGGTTATTATTAGAAATAGGTGTTTGGTATAAAAATACACATAGTTACATTTTACTAAAACACGTAAAGAAAATGTACATAGAACCCATGTTGATGTGATTAACCCAGATGTCCTGGGGGAAAAGATTATTTGTAGACTTAGTATAAATGGTTTTACACCAAGACAGAAGATCTTAAGATGCAGCCACTCATGATACTTTTTGAAATCCACAGCTGACTGTTGTACACATTTTGTGGTGCTGACAGTTTGGGTTGGGCCTTATTTGAATGCTGGATTAGATTTATGGCACGAATATTTAGTCTGTGCAGTCACACTATAGGACTAACTAGTCTATAAGAAGAAATGAAACACTATTTGCCACGTGCGCAAAATCTGATAAATCACTTGCtggaaatgacaaaaacaattgtGTGCACTGTTGTCTGCAAACATCTTCACTCCAGCGGTTTAAACTGgggttatttatttttgaaagtttcaatgtttttaacattgtgtgAACTGCTGTACCTCAGATAAGTGCTGGATCCGCACAGGTTTAAAGCATGACATTTTACACTAAAATGGTCAAGATAGTGTAAAAGCTGAACTTTTTTCTGAGGCCTATGTAACTGACGCACAGTATAACATTAATACAACATCATACTGCTGCTTGCTTTGGCTTCACAAACGGGGatgtgatttctttctttttttaactctcATGGTGCAGAACTAACCTGTTTAATGCTGAAAGACACAACACTTTTTTTACTGCTGATGTTATGAAAAGGTTGGTgccacaaaacattaaaaaaaatctcatttaATTTTTGTGTAAAATccctttatttcttttaatcttttctaGTACGGCCTCTATGGCCACCGCATAACTTTGCCATCAAAGTGACGTTCTGTTTTCAATATatgatgtgttttgtgtttctcatattgtctttcatgtgtttttaagattttcttttctttgctgtGGTTTGAGAAGACGCCCCAGATCATTTCATGTGTTACGCAGTCTGTCcatgaaatgtattttaataaaatTCATGTCAACATTCAAGTACTGAATGATCTTGCATAGCAAGAAAATGTTGTCAGGTCTGATCTTTTACCAAGTAACTGAGGTCATGCATGTTATGTCATTGGAAAATTAATTACAGTACATGTTTTTAGATTTTTACAATGTGTTGGGTTGAAATCAAACTGAACTCAGCAGTTAAGACTTTAACAAAGGTTTCTACTAAAACTCTAAAACATAACCCCCAAGCTGTgacattcaaataaaataactgTTTAACATATTCATCTGTATTCATACATTACACACCATTACAAAGAGCTGTTTTTATGGCTGATGTGAGGTGACAACATTTTTACAATAAACACTGAACTGTGACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249994 lncRNA upstream 1025 16291211 ~ 16356548 (+) True G184618
TU249948 lncRNA upstream 309892 16045809 ~ 16047681 (+) True G184584
TU249901 lncRNA upstream 429911 15926071 ~ 15927662 (+) True G184540
TU249894 lncRNA upstream 435775 15914645 ~ 15921798 (+) False LOC120546249
TU250006 lncRNA downstream 4293 16379507 ~ 16381781 (+) False cenpw
TU250010 lncRNA downstream 25694 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA downstream 26988 16402202 ~ 16404077 (+) False G184628
TU250017 lncRNA downstream 36462 16411676 ~ 16413501 (+) True G184633
TU250220 lncRNA downstream 117980 16493194 ~ 16494494 (+) False LOC120546561
XM_039782560.1 mRNA upstream 4918 16340938 ~ 16352655 (+) True rnf217
XM_039782561.1 mRNA upstream 4921 16340939 ~ 16352652 (+) False rnf217
XM_039782626.1 mRNA upstream 22158 16248094 ~ 16335415 (+) True nkain2
XM_039781210.1 mRNA upstream 230659 16109352 ~ 16126914 (+) True med23
XM_039781211.1 mRNA upstream 230659 16109352 ~ 16126914 (+) False med23
XM_039782792.1 mRNA downstream 4265 16379479 ~ 16381856 (+) True cenpw
XM_039782793.1 mRNA downstream 9057 16384271 ~ 16386778 (+) True LOC120547267
XM_039782795.1 mRNA downstream 12544 16387758 ~ 16390630 (+) True LOC120547268
XM_039781549.1 mRNA downstream 111800 16487014 ~ 16490639 (+) True LOC120546559
XM_039782672.1 mRNA downstream 143230 16518444 ~ 16523666 (+) True pgm3
TU249895 other upstream 389450 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 641289 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 641289 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 693999 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 1038737 15301925 ~ 15318836 (+) True G184458
TU250012 other downstream 24224 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 390331 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 450480 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 918440 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 966623 17341837 ~ 17365977 (+) False map7b

Expression Profile