RNA id: XM_039781861.1


Basic Information

Item Value
RNA id XM_039781861.1
length 4638
RNA type mRNA
GC content 0.43
exon number 11
gene id si:ch211-57i17.1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16765545 ~ 16779935 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctCCCCGTCTAGTCCAGTGTCTAGAAGCCGAGAACAGAGCACCATCGAGGGGTCTAACTGGCTGTCAACAGAGCTCCTACGGCAGTCATGGCGGCGCCGTTAGCCCACTTCGATGAGGACTGGCAGGATTTTAACGAGTTCAAGCCGTCCTCGGCGTCGGCCGACCAGCTGGACCAGCTGAACTCAAACGTAAGCGATCCTTCGTCGGGCCTAGACGATTTCTCAGACCTGGACAACAGTTTCTCCGGGGAGATCTGCAGCTTCAAATCGATGGAGGACCTCGTCCACGACTTCGACGAGAAGCTGACAGTGTGTTTCCGAAACTACAACAGCACGACAGAAAACATAGCCCCCATTAAACCCATCACAGAGGATAGTTACTTGAAAGACGACGAAGTGTGGAACGCTCTGACAGATAATTATGGCAACGTGATGGCTGTGGACTGGAAGACATCGCACACTCGCTCCCTACACCTGCCCACCCTCAACATCACTGAGCATGAGCAGAAGAGCCAAGAAACAAATAAGTTGGATAACCAATCTCTGGATCTGTCTGACGACGAGGAGCTCAGGGAGCAGATGGATATGCACTCAATCATCGTCTCCTGCATCAACGACGAGCCGCTCTTCACAGCCGAACAGgtgatCGAGGAGATAGAGGAGATGATGCAGGAATCTCCAGACCCAGAGGACGATGAGAGTCCCTCACAGTCCGACCTGTCCATGCTCTCTCAGGACCTCCACGCCCTGAAACGCTCCGGCTCCAACACCAGCTACGAGGACCGGCTGCGTCAGCTGTCTGTGTCTGAACTAACCGAGACTctggaggaagtggagacggCCATCCGCCGCTACAGCGAAGAGCTGATCCAGGCTCTGGCCCTGCGAGACGAACTCGACTATGAAAAGGAGGTGAAGAACAGCTTCATCTCGCTGTTGATCGACGTGCAGAACAGACAGAaggagcaccgcgagctgctgcggaagaagaagaaaatccgAAGTACGACTACAATCGGGCCCAACGGCCAGAGGACCGCCAGCACGCACATACCAGGCACGCTCCTCACTCTGGAGGGACTCTCCAATGTCATTCAAAATGGCCTCCGTCAAACTTTTGGCAACACAGGAGGGGACAAACAGtaccTAACCACAGTAATCCCTTATGAGAAGAAAGCTGGCTCCCCGGTGGTAGAAGACCTCCAGATCCTCACAAAGATCCTCCACGCCATGAGGGATGACAGTGAGAAGGTTCCTGCCCTGCTAACAGACTACATTCTCAAAGTGCTTTGTCCCACGTAAAGCCAAAGGAAAGCCTCCTGTTTCCAGAACCATTCATTGGACCATCAGAAGAGGGTTCTGGTAATCTGGAAGAACCCAGATAATGGATTCAAAATCTTCCtttctccttctttctttttttttctttctttcaaaccATAGACTTTCTTTccttgtggcttttttttttttttatctgccacTGTTGTTGTTCTTACAGTTTTAACTCTAAATATAACCTCCTTGGTCTGTATAGTTCTTTTCATATgtaatgttttaactttttaatgccTGAGTGATACAAACCGGTAACTCCTGACTGCATGATGACTTGTCTGTGGATGCCAGTAATCAGTATTAGTCTGAACACCTCACTTCCTGATTAGCCAGTGGCTCTTGAATTGACAAGGGCCAGGGGTATATTTTAATTCCATGGGCTTCATCAGCAGGCCTGTGTGAGGGGAATACGCAGTCCAGTTTTGTAAATCGAATGCATTTGCATCAGTGTAGCTCAAGCCTGACGGGGGGGAAAAACAAATCCTGGGGGAATCCAGGCCAGGCTGGTCGTGGTATTGAGCATAAATCCTGTGTTTCCTGTATGAAAACCTTCGCTTTAATGGCATTTGCTGATTGATTGCATATAATGTCTCGGGGGTTGAAAACTCTGCCTGCTAAAGATTAAAGAGCAAACCCTTTAACTTTGAAATCGTAGGTTTACCCGTCTTTGCATGTTGGTTTTGGGTTTATGCTCAATTTTGGCTGATAGTTgaatgttaaaatgaaatattttgtaTACGAATAAGAGAAATTGCACAGTTTTTGgatctttttactttttgaaaaagggaagaaaaaaaaagttcaaatgaCTTAAGAAGGTAATAGCTGGATGAACAAACATATAAAGCATATTTTCAGAGAAGGAATTGTTTGTAGTGAGATTAGGGATTTACCAGTAGCCACCTTTTGTGACCACACTGCAACATCATTTTGTAAATGCTGTCCATTGACCTCTGAGCCCTCAAATAGTGACCGCCGACCCCAACAACTTTATCACTTCCCCAGGAGTCGTCATTACATGAGTCTGAAAATACCTCGCATAACATATTTGCATTAGTAGAAAATGACCCAGCTGGTCGTGTCATTAGGATAAATAATGTCAATAAGATTATGATAGGTTTTTAAATTGTGTAGTTAAGCTTCTGTTATAAGTTGTTGGGTTTTCTCTATCTGTTAACCCTTAAACTGTTGTGGAAATGTTGTGGTAGCACTTTAGTCTGTCTGTGATCTGGTCATGTAGTAGTGGAATATGTGGTTGATACTTAAGAGTACGTCTCACTAGATTAGTGTTAGATGAGGCTTATAAGCTTTAGCTAGTGGTGCCAAAACATGTCCGCATGAGGAATTGTTGTCATGCATCCATCTATTAACCTTATTAATCATCGTGAGCATGATAACTTAAACCACCTTTAAGGGGTACtccactgattttacacatTACATTCAGTTTACACATCATACAGATTACTGCTCAGCCTGTAAAACGGTTGTATAATGCCGTCTGCAGCTCTGGAGGAGTTTTGTCAAAGTTGAGAAGTtgaccctgatgatgtcatgatGATGTCATAAGGGTCATCTCGGCTTGGACTTGAGACTACAAATTTATAACTGAAAGCCTTTGTTAAAAACTCAGTGCGTGGAGTTTTGAAAAGATGTGGGTCAAATGAGAAATACACTAtcgagttgcattatgggaattgTAGGATCCAGTGTATTTGGAGCTTGCCCCATACTAGAGACTAAAACTTAGAATATCTCAGCCTCTGCCTAATCAATTTTGATCGCCTCTTGCGAGTCTCCACACATCATGGTagtgcaatactaaatcacTGGAGCACCCCTTTAAAAGCCCATACCACCGGTCTAGCACTGCAGGTCAGTTGGTACACTAAAGGTTCAGATCACCAGCTGCTACAGGTGCACCACACACTGTCAGATCAGGTCTAGTCTAGCTCTCAGGTACGATCATCAGTGTTAGTAGTTTAAAATCCTGTTCTGAAAGGTACTGACATTCCTGAGTCTTTGTATGTTTCTGGTAACCTTTGTATTAGCTAGACTTCAACTTTGCtgcacttttttcttttaacaaattTCTCTAAATACCTGGACGAGCCAGTGGAGGCAATCACGGTAGCCTCTTGACTAAACCAGGGTAGCATTACAGATGTTGATTTATGTCGTGATTTGTTGAAACACAATATAATGCTTAAAGTTCTAGACTCTGATTAGTAGTGTAGTTAGCAATTAAACGGCACAGTAGCATCCGCTTGGTGTAGCAGTCTTGTGACGATAGCGTAGATGCAGTTGTAACATCTACCGGctttgatttattaaaaaatgcGTTAATATGGAGGAGAAGGTGAAACTCTGAAAAGGCAATCTACTTTTACTGGTTAAACTTTTTAGGCATGTTTCACAGAAGATAAGGGCATAGGAAGATGCCGAAGGGGTGTGATAAAGTTCATGGATGTTGGGTAAGATTGCACAAAGGGTTGCTTAAATTTGAGGGGtccattttattcttttttaaaggaGACAAAAGCTTATAGCTCTATATTTACTATTTATATGTAACtgttgtttctactgttgccaGCTTTGCAAACATTCACAACCTAGCATGTGCTACATGCACTTTACTGCTGCAAACACATTTCTAATAATGATTAATTTGTTGTTTACAGACATATTAATATCACACTAAAAGGGACAAGTGCATGTCGCAGTAGAATGCAGAAAAACGCAAAGCAAATAAGCATTACATTTAAACTGTTAAGAAGATATCAAAAAGGGCAAAGTTAAACATCAGAAGTTGTGTGTCCGTGAAACACACAAGTCACTTAGAGAAAAACATCCCTCGATTTGATCCTGATCTTACAAAAGCTTAAATCATCTTTTTAGTTTTATAATGAAATGGCGGTCAGCTTGGAAGTAGGAGGATCTGGATCCCGTCTCAGGCCAGAACCCCTTGTCCTGGTCTCTTATTAGCGACATATCAGTGTAACGACAATTTAgagatttatatttatatacgtACAACAAAACAAGCAACAGAAAAAGAGGCTGCCTTTGTAAATGCCTGAAATATTTTGTACATTAAACCaactcctttttgtttttaatgcaaTATAATTCCTCAGTTTGGGGTTTTATGTTTACTGTCTCATGTGGTACTGCAGTATATTAatttattatgtaaatgttCGGTTTTGTAACCATGTTATTGACTGTAATGGTGCAAGTATTTGTGCCCACATTGCATTGCAACTCATTTCAAATAAATTAATATGTAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250341 lncRNA upstream 39153 16724877 ~ 16726392 (+) True G184851
TU250330 lncRNA upstream 79466 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 155165 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 249212 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 263658 16495957 ~ 16501887 (+) False LOC120546561
TU250480 lncRNA downstream 153761 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 501180 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 508916 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 508916 17288851 ~ 17291556 (+) False G184995
TU250579 lncRNA downstream 613599 17393534 ~ 17397048 (+) True G185022
XM_039781814.1 mRNA upstream 2101 16746173 ~ 16763444 (+) True wdr26b
XM_039781964.1 mRNA upstream 20715 16730063 ~ 16744830 (+) False LOC120546775
XM_039781963.1 mRNA upstream 20715 16733977 ~ 16744830 (+) False LOC120546775
XM_039781962.1 mRNA upstream 21165 16730088 ~ 16744380 (+) True LOC120546775
XM_039781921.1 mRNA upstream 79467 16671591 ~ 16686078 (+) False vegfab
XM_039781872.1 mRNA downstream 57599 16837534 ~ 16856613 (+) False lpin1b
XM_039781873.1 mRNA downstream 61097 16841032 ~ 16856613 (+) True lpin1b
XM_039781875.1 mRNA downstream 78273 16858208 ~ 16873108 (+) True gnpat2
XM_039782390.1 mRNA downstream 96384 16876319 ~ 16880335 (+) True fam228a
XM_039782392.1 mRNA downstream 96385 16876320 ~ 16880335 (+) False fam228a
TU250012 other upstream 363442 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 797422 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 1049261 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 1049261 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 1101971 15660573 ~ 15663574 (+) True rhov
TU250355 other downstream 45759 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 513719 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 561902 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 561902 17341837 ~ 17365977 (+) False map7b
TU250758 other downstream 889237 17669172 ~ 17672886 (+) False G185145