RNA id: XM_039781880.1


Basic Information

Item Value
RNA id XM_039781880.1
length 2517
RNA type mRNA
GC content 0.46
exon number 11
gene id flvcr2b
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18419656 ~ 18442262 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTATAATAGGGACAGTTAACTCAAGAGGTAAAACAAGGTTTGAGTTTGTAGGAGTGGTTTAAGTAGAATTGGAAGAATTCCTATATTAACATCACATGACTGGACTGAAGGCAATAAATATGTGGCATAGATGCCATCACATGGTATGAGTTGTGAATCAGGACACTAGTAAAGGCAACGGTAACTCCAGCTCTGGTCGCTCTCTGGCTCCTCTGAGAAAAGCATCTTTCTACTACACGAAGTTTGCACACAGGACAGCAAGCTGTTTAGGACACACGCTCTGAAATTTCAAGACCTCTCACCTCTCACGCTTCAGGGGCCCACTTTAGGACTGTTAAAATGCCACAAAACAATactttgaaagacaaccatgcAAATTCTGAACCCGGTGGTGAAGAATGGCCGTGGTCCAAGGCTGCAGAGAATCCCGCTCCGGGCCTCGCTTCACTGCAGTGGACTCCCAGACCTTTAGGCAGAGCCATCTCTATTGGGTCACGGTTAGACGTCGTGGCTTTACAGGCTGACCGGGCAGAGCAGGTCCCCAAGGCTGAGACCAAACTTCACCACCGTCGCTGGCTCATGCTGTTTCTCTTTAGCGCCGTCTCAGCCAGCAATGCCTTTATGTGGCTTCAGTACAGCATTATTAGCAAAATATTCATGCGCTTCTACAACATTGACTCTCTGGCCATCGACTGGTTGTCCATGATCTACCTGCTCACTTACATTCCACTCATTCTGCCCGTCCTGTGGCTTCTGGACAACAGGGGAATCCGGGACGTTGTCCTTGTTGGGTCAGCCTTTAACTGCATTGGTGCTTGGATAAAAATTGGTAGTGCCAGTCCCAATCTGTTCCCAGTCACCTTTTTTGGCCAGTTTATGTGCTCAGTAGCCACTGTGTTCGTCCTTGGTATTCCCTCTTACCTTGCCTCAGTGTGGTTCGGAGAGAAAGAGGTTTCCACCGCTTGTTCCATAGGAGTTCTGGGAAATCAGCTGGGTATTGCCATTGGGTTCCTTGTGCCTCCCGTCCTGGTGCCTAATGTGGACGACTTGGACGAGCTGGCTCATCACATCAGCATTATGTTCTACATCACAGCAGGAGTGGCTACCTTACTCTTCATCCTAGTTATCTTTGTCTTTCAGGAGCATCCTAAACTTCCTCCGACTCAGGCCCAGGCCACAGCTCGTAGCATCCCTCCAGAGCAGTACTCCTACATGGCCTCTATTCTCAGGCTGCTCCGCAACAAGCCCTtcatcctcctcatcatcactTACGGTTTGAACGTGGGTTGTTTCTATGCTGTTGGCACCTTGCTGAACCGCATGATCATCGAGCATTACCCTGGAGAAGAAGTGAATGCTGGGAGGATTGGCCTCACCATTGTCATTGCGGGGATGGTCGGCTCCCTCATCTGTGGCATTTGGTTAGACAAAACTAAAACTTACAAgcaGACAACCCTTGCAGTCTACTTCATGTCTCTGGTGGGGATGATAGTCTATGCTGCTACACTCAATCTAGGACACCTCTGGGTGGTCTTCATCACCGCTGGAGCTCTTGGgttCTTCATGACGGGCTACCTGCCGCTGGGCTTTGAGTTTGCGGTGGAGCTGACGTACCCAGAGTCAGAGGGAACCTCATCCGGACTCCTCAACTGCTCAGCACAGGTATTTGGCATTATATTCACCATCTGCCAGGGGAAGATCATGGAGCGCTTCGGCACACTGGCAGGAAACATCttcctctgtgtttttcttttaatcggCACAATAATGACAGGCTTAATTAAGTCTGATCTGCGGAGACAAAATGCAAACATGTTGGCCAAAGCAGCAGCGGAGGGGCAGAAGTCGGGACAAGACTACGGAGCCACCTCGCTAATCACCCATCCGCAGACTCCTCCTTCACACGCCTGATCAATAAACCTTTCTGCCTTCACAAAAAAATCTACTCAAATCTTAGCTCAACACTCAGATGCACAAAGGGACCTTCAGACTGCCACGATAAAGGCCTGGCTGGATCGTCTATCGTCGAAGAAGCCAAGTTTTAGACgcaaaacacactaataaagatTACATAAAAGCTTTGAAAATGACCATGAACTTCTTCCTGTTACAGTGTAACATACTGAGATAGAACAACACCATCCAGAAGTCTTTAGACCCACTTCCTTTTAGATGTACAGTGTTGTATTAACTatttacactttaaaaaaaagcttgaatgcttaattatattaaatatataaaatgtactgttcagcaatgtttttttacatttaagtgTAAGTAAGTGTACTCTCAATAAATCTGCAAGACACATTTGTGAAACGTTTGTGCCTCTACAGTTTTACCTGTCAGTACTTTAAGGATACAGTGTTgattatgtacagtacatttgcCATGAAAAAATGACTAATTCTGTTATTGCTTATTAACAGATACTGTAAATACAGCATGAGTGATTTTGGTATTTGTGGTTAAAATAATTTATACAGCATTAAAGGGTTTCTAATCCGCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251071 lncRNA upstream 26981 18396866 ~ 18397171 (+) True G185374
TU251057 lncRNA upstream 109673 18314228 ~ 18314479 (+) True G185361
TU251056 lncRNA upstream 115417 18308335 ~ 18308735 (+) True G185360
TU251055 lncRNA upstream 118575 18305254 ~ 18305577 (+) True G185359
TU251053 lncRNA upstream 121187 18302698 ~ 18302965 (+) True G185357
XR_005636953.1 lncRNA downstream 1690 18443952 ~ 18464028 (+) True LOC120546827
XR_005636954.1 lncRNA downstream 1690 18443952 ~ 18462608 (+) False LOC120546827
TU251124 lncRNA downstream 184019 18626281 ~ 18635052 (+) True ylpm1
TU251126 lncRNA downstream 194112 18636374 ~ 18640381 (+) True G185414
TU251127 lncRNA downstream 196830 18639092 ~ 18640381 (+) False G185414
XM_039781885.1 mRNA upstream 4992 18414012 ~ 18419160 (+) False batf
XM_039781884.1 mRNA upstream 4992 18414437 ~ 18419160 (+) True batf
XM_039782805.1 mRNA upstream 15075 18402072 ~ 18409077 (+) False zc3h14
XM_039782050.1 mRNA downstream 58729 18500991 ~ 18581123 (+) False LOC120546828
XM_039782051.1 mRNA downstream 100290 18542552 ~ 18581123 (+) True LOC120546828
XM_039781340.1 mRNA downstream 156103 18598365 ~ 18635044 (+) False ylpm1
XM_039782584.1 mRNA downstream 206039 18648301 ~ 18654514 (+) True LOC120547135
XM_039781662.1 mRNA downstream 253393 18695655 ~ 18698104 (+) True fosab
XR_005637008.1 other upstream 369226 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 372081 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 506904 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 737754 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 751266 17669172 ~ 17672886 (+) False G185145
unassigned_transcript_1081 other downstream 490054 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 761892 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 987333 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 987333 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 987334 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile