Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039781885.1 |
| length | 1271 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 3 |
| gene id | batf |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_053129.1 |
| NCBI id | CM020926.1 |
| chromosome length | 36987114 |
| location | 18414012 ~ 18419160 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU251071 | lncRNA | upstream | 16841 | 18396866 ~ 18397171 (+) | True | G185374 |
| TU251057 | lncRNA | upstream | 99533 | 18314228 ~ 18314479 (+) | True | G185361 |
| TU251056 | lncRNA | upstream | 105277 | 18308335 ~ 18308735 (+) | True | G185360 |
| TU251055 | lncRNA | upstream | 108435 | 18305254 ~ 18305577 (+) | True | G185359 |
| TU251053 | lncRNA | upstream | 111047 | 18302698 ~ 18302965 (+) | True | G185357 |
| XR_005636953.1 | lncRNA | downstream | 24792 | 18443952 ~ 18464028 (+) | True | LOC120546827 |
| XR_005636954.1 | lncRNA | downstream | 24792 | 18443952 ~ 18462608 (+) | False | LOC120546827 |
| TU251124 | lncRNA | downstream | 207121 | 18626281 ~ 18635052 (+) | True | ylpm1 |
| TU251126 | lncRNA | downstream | 217214 | 18636374 ~ 18640381 (+) | True | G185414 |
| TU251127 | lncRNA | downstream | 219932 | 18639092 ~ 18640381 (+) | False | G185414 |
| XM_039782805.1 | mRNA | upstream | 4935 | 18402072 ~ 18409077 (+) | False | zc3h14 |
| XM_039782804.1 | mRNA | upstream | 4935 | 18402073 ~ 18409077 (+) | False | zc3h14 |
| XM_039782803.1 | mRNA | upstream | 4935 | 18402074 ~ 18409077 (+) | True | zc3h14 |
| XM_039782508.1 | mRNA | upstream | 55099 | 18347236 ~ 18358913 (+) | True | LOC120547097 |
| XM_039781471.1 | mRNA | upstream | 120177 | 18283900 ~ 18293835 (+) | True | chrna2b |
| XM_039781883.1 | mRNA | downstream | 496 | 18419656 ~ 18442262 (+) | True | flvcr2b |
| XM_039781881.1 | mRNA | downstream | 4987 | 18424147 ~ 18442262 (+) | False | flvcr2b |
| XM_039781879.1 | mRNA | downstream | 4987 | 18424147 ~ 18441066 (+) | False | flvcr2b |
| XM_039781878.1 | mRNA | downstream | 4988 | 18424148 ~ 18442262 (+) | False | flvcr2b |
| XM_039781880.1 | mRNA | downstream | 4992 | 18424152 ~ 18442262 (+) | False | flvcr2b |
| XR_005637008.1 | other | upstream | 359086 | 18020963 ~ 18054926 (+) | True | fndc4a |
| XR_005637007.1 | other | upstream | 361941 | 18020963 ~ 18052071 (+) | False | fndc4a |
| TU250889 | other | upstream | 496764 | 17916853 ~ 17917248 (+) | True | G185237 |
| TU250755 | other | upstream | 727614 | 17682558 ~ 17686398 (+) | True | G185145 |
| TU250758 | other | upstream | 741126 | 17669172 ~ 17672886 (+) | False | G185145 |
| unassigned_transcript_1081 | other | downstream | 513156 | 18932316 ~ 18932387 (+) | True | trnae-cuc_27 |
| TU251420 | other | downstream | 784994 | 19204154 ~ 19208096 (+) | False | LOC120546624 |
| XR_005636888.1 | other | downstream | 1010435 | 19429595 ~ 19539308 (+) | False | nhsl1b |
| XR_005636889.1 | other | downstream | 1010435 | 19429595 ~ 19539208 (+) | False | nhsl1b |
| XR_005636890.1 | other | downstream | 1010436 | 19429596 ~ 19539208 (+) | False | nhsl1b |
